{ "type": "genome", "identifier": "GCF_000312485.1", "organism": "Yersinia massiliensis CCUG 53443", "title": "Yersinia massiliensis CCUG 53443", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ebi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000312485.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2272758", "wgs_master": "CAKR00000000.1", "refseq_category": "reference genome", "taxid": "1205683", "species_taxid": "419257", "organism_name": "Yersinia massiliensis CCUG 53443", "infraspecific_name": "strain=CCUG 53443", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/10/03", "asm_name": "ASM31248v1", "asm_submitter": "ebi", "gbrs_paired_asm": "GCA_000312485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/312/485/GCF_000312485.1_ASM31248v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5050276", "genome_size_ungapped": "5028113", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000312485.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4604", "protein_coding_gene_count": "4446", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-10-03", "dateModified": "2012-10-03", "datePublished": "2012-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia massiliensis CCUG 53443" ], "sample_taxid": [ "1205683" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.436 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5050276", "Number of Sequences": "22", "Longest Sequences (bp)": "1955540", "N50 (bp)": "792866", "Gap Ratio (%)": "0.438847", "GCcontent (%)": "47.3", "Number of CDSs": "4506", "Average Protein Length": "315.9", "Coding Ratio (%)": "84.6", "Number of rRNAs": "5", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia massiliensis", "strain": "strain=CCUG 53443", "accession": "GCA_000312485.1", "taxid": 419257, "species_taxid": 419257, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1675, "total_fragments": 1675, 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"GCA_902726545.1", "taxid": 2890315, "species_taxid": 2890315, "relation_to_type": "type", "validated": true, "ani": 83.481, "matched_fragments": 985, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia proxima", "strain": "strain=IP37424", "accession": "GCA_902170785.1", "taxid": 2890316, "species_taxid": 2890316, "relation_to_type": "type", "validated": true, "ani": 83.2951, "matched_fragments": 1097, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia rochesterensis", "strain": "strain=ATCC BAA-2637", "accession": "GCA_003600645.1", "taxid": 1604335, "species_taxid": 1604335, "relation_to_type": "type", "validated": true, "ani": 83.2756, "matched_fragments": 1034, "total_fragments": 1675, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia aldovae", "strain": "strain=IP06005", "accession": "GCA_001091225.1", "taxid": 29483, "species_taxid": 29483, 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