{
    "type": "genome",
    "identifier": "GCF_000312505.2",
    "organism": "Fenollaria massiliensis",
    "title": "Fenollaria massiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "ebi",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000312505.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2272216",
        "wgs_master": "CALI00000000.2",
        "refseq_category": "na",
        "taxid": "938288",
        "species_taxid": "938288",
        "organism_name": "Fenollaria massiliensis",
        "infraspecific_name": "strain=9401234",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/17",
        "asm_name": "Cb_9401234",
        "asm_submitter": "ebi",
        "gbrs_paired_asm": "GCA_000312505.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/312/505/GCF_000312505.2_Cb_9401234",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1709677",
        "genome_size_ungapped": "1709611",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000312505.2-RS_2024_04_11",
        "annotation_date": "2024-04-11",
        "total_gene_count": "1694",
        "protein_coding_gene_count": "1623",
        "non_coding_gene_count": "33",
        "pubmed_id": "25197455"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-17",
    "dateModified": "2013-07-17",
    "datePublished": "2013-07-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fenollaria massiliensis"
        ],
        "sample_taxid": [
            "938288"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.476 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1709677",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "410648",
        "N50 (bp)": "360128",
        "Gap Ratio (%)": "0.003860",
        "GCcontent (%)": "34.5",
        "Number of CDSs": "1674",
        "Average Protein Length": "309.3",
        "Coding Ratio (%)": "90.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fenollaria massiliensis",
                "strain": "strain=9401234",
                "accession": "GCA_000312505.3",
                "taxid": 938288,
                "species_taxid": 938288,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 567,
                "total_fragments": 567,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fenollaria sporofastidiosus",
                "strain": "strain=EMRHCC_24",
                "accession": "GCA_943169635.1",
                "taxid": 2811778,
                "species_taxid": 2811778,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0259,
                "matched_fragments": 434,
                "total_fragments": 567,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000312505.2",
                "gtdb_species": "s__Fenollaria massiliensis",
                "ani": 100.0,
                "matched_fragments": 567,
                "total_fragments": 567,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.81",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900539725.1",
                "gtdb_species": "s__Fenollaria sp900539725",
                "ani": 88.8538,
                "matched_fragments": 398,
                "total_fragments": 567,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.17",
                "min_intra_species_ani": "95.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900539225.1",
                "gtdb_species": "s__Fenollaria sp900539225",
                "ani": 88.5757,
                "matched_fragments": 403,
                "total_fragments": 567,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.44",
                "min_intra_species_ani": "95.44",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001457835.1",
                "gtdb_species": "s__Fenollaria timonensis",
                "ani": 88.3654,
                "matched_fragments": 422,
                "total_fragments": 567,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905332505.2",
                "gtdb_species": "s__Fenollaria sp905332505",
                "ani": 87.1483,
                "matched_fragments": 422,
                "total_fragments": 567,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Fenollaria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 1709611.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fenollaria",
        "massiliensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}