{ "type": "genome", "identifier": "GCF_000312565.1", "organism": "Bartonella rattaustraliani AUST/NH4", "title": "Bartonella rattaustraliani AUST/NH4", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ebi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000312565.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2272486", "wgs_master": "CALW00000000.2", "refseq_category": "reference genome", "taxid": "1205681", "species_taxid": "481139", "organism_name": "Bartonella rattaustraliani AUST/NH4", "infraspecific_name": "strain=AUST/NH4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/12/04", "asm_name": "ASM31256v2", "asm_submitter": "ebi", "gbrs_paired_asm": "GCA_000312565.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/312/565/GCF_000312565.1_ASM31256v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2158445", "genome_size_ungapped": "2158445", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "108", "contig_count": "108", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-24", "total_gene_count": "1925", "protein_coding_gene_count": "1684", "non_coding_gene_count": "49", "pubmed_id": "23209252" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-12-04", "dateModified": "2012-12-04", "datePublished": "2012-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella rattaustraliani AUST/NH4" ], "sample_taxid": [ "1205681" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2158264", "Number of Sequences": "107", "Longest Sequences (bp)": "256804", "N50 (bp)": "52303", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.8", "Number of CDSs": "1811", "Average Protein Length": "275.5", "Coding Ratio (%)": "69.3", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella rattaustraliani", "strain": "strain=AUST/NH4", "accession": "GCA_000312565.2", "taxid": 481139, "species_taxid": 481139, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 660, "total_fragments": 661, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella callosciuri", "strain": "strain=DSM 28538", "accession": "GCA_014203215.1", "taxid": 686223, "species_taxid": 686223, "relation_to_type": "type", "validated": true, "ani": 83.1549, "matched_fragments": 463, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella phoceensis", "strain": "strain=CIP107707", "accession": "GCA_902825145.1", "taxid": 270249, "species_taxid": 270249, "relation_to_type": "type", "validated": true, "ani": 82.7962, "matched_fragments": 465, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. berkhoffii", "strain": "strain=CIP 104960", "accession": "GCA_902825225.1", "taxid": 40933, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.6556, "matched_fragments": 446, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. berkhoffii", "strain": "strain=ATCC 51672", "accession": "GCA_000518105.1", "taxid": 40933, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.5301, "matched_fragments": 440, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=OK-94-513", "accession": "GCA_000278235.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.4561, "matched_fragments": 443, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella florencae", "strain": "strain=R4", "accession": "GCA_000312525.1", "taxid": 928210, "species_taxid": 928210, "relation_to_type": "type", "validated": true, "ani": 82.2877, "matched_fragments": 462, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-1", "accession": "GCA_000046705.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.2481, "matched_fragments": 453, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=G-5436", "accession": "GCA_021560445.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.1585, "matched_fragments": 462, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.1534, "matched_fragments": 454, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.1324, "matched_fragments": 458, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella birtlesii", "strain": "strain=IBS 325", "accession": "GCA_000273375.1", "taxid": 111504, "species_taxid": 111504, "relation_to_type": "type", "validated": true, "ani": 82.0968, "matched_fragments": 458, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_175", "accession": "GCA_001525625.2", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.0855, "matched_fragments": 457, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella alsatica", "strain": "strain=IBS 382", "accession": "GCA_000280015.1", "taxid": 52764, "species_taxid": 52764, "relation_to_type": "type", "validated": true, "ani": 82.0664, "matched_fragments": 446, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella alsatica", "strain": "strain=CIP 105477", "accession": "GCA_013388295.1", "taxid": 52764, "species_taxid": 52764, "relation_to_type": "type", "validated": true, "ani": 82.0638, "matched_fragments": 444, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella senegalensis", "strain": "strain=OS02", "accession": "GCA_000312545.1", "taxid": 1468418, "species_taxid": 1468418, "relation_to_type": "type", "validated": true, "ani": 81.811, "matched_fragments": 466, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella grahamii", "strain": "strain=NCTC12860", "accession": "GCA_900445635.1", "taxid": 33045, "species_taxid": 33045, "relation_to_type": "type", "validated": true, "ani": 81.7912, "matched_fragments": 480, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella koehlerae subsp. koehlerae", "strain": "strain=C-29", "accession": "GCA_000706625.1", "taxid": 1819240, "species_taxid": 92181, "relation_to_type": "type", "validated": true, "ani": 81.7147, "matched_fragments": 432, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella harrusi", "strain": "strain=117A", "accession": "GCA_024297065.1", "taxid": 2961895, "species_taxid": 2961895, "relation_to_type": "type", "validated": true, "ani": 81.6109, "matched_fragments": 481, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 81.5843, "matched_fragments": 478, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella gabonensis", "strain": "strain=669", "accession": "GCA_903679515.1", "taxid": 2699889, "species_taxid": 2699889, "relation_to_type": "type", "validated": true, "ani": 81.3312, "matched_fragments": 445, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=ATCC 700133", "accession": "GCA_000526895.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.2565, "matched_fragments": 422, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=CCUG 50770", "accession": "GCA_902728115.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.2485, "matched_fragments": 416, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=DSM 102055", "accession": "GCA_014201435.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.2235, "matched_fragments": 426, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC12862", "accession": "GCA_900445535.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.1985, "matched_fragments": 436, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.1953, "matched_fragments": 434, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella bacilliformis", "strain": "strain=KC583; ATCC 35685", "accession": "GCA_000015445.1", "taxid": 774, "species_taxid": 774, "relation_to_type": "type", "validated": true, "ani": 78.8031, "matched_fragments": 260, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000312565.1", "gtdb_species": "s__Bartonella rattaustraliani", "ani": 100.0, "matched_fragments": 660, "total_fragments": 661, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014203215.1", "gtdb_species": "s__Bartonella callosciuri", "ani": 83.1549, "matched_fragments": 463, "total_fragments": 661, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bartonella", "rattaustraliani", "AUST/NH4" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }