{ "type": "genome", "identifier": "GCF_000313175.2", "organism": "Leptospira santarosai serovar Shermani str. LT 821", "title": "Leptospira santarosai serovar Shermani str. LT 821", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kidney research center, Chang Gung Memorial Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000313175.2", "bioproject": "PRJNA224116", "biosample": "SAMN02470123", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "758847", "species_taxid": "28183", "organism_name": "Leptospira santarosai serovar Shermani str. 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LT 821" ], "sample_taxid": [ "758847" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.109 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3983611", "Number of Sequences": "2", "Longest Sequences (bp)": "3659905", "N50 (bp)": "3659905", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "3511", "Average Protein Length": "314.1", "Coding Ratio (%)": "83.0", "Number of rRNAs": "5", "Number of tRNAs": "37", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptospira santarosai", "strain": "strain=LT 821", "accession": "GCA_000313175.2", 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"type", "validated": true, "ani": 86.6066, "matched_fragments": 1031, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira alstonii", "strain": "strain=79601", "accession": "GCA_000347175.1", "taxid": 28452, "species_taxid": 28452, "relation_to_type": "type", "validated": true, "ani": 82.9304, "matched_fragments": 977, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira kmetyi", "strain": "strain=Bejo-Iso9", "accession": "GCA_000243735.3", "taxid": 408139, "species_taxid": 408139, "relation_to_type": "type", "validated": true, "ani": 81.2685, "matched_fragments": 838, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira yasudae", "strain": "strain=F1", "accession": "GCA_003545925.1", "taxid": 2202201, "species_taxid": 2202201, "relation_to_type": "type", "validated": true, "ani": 80.5204, "matched_fragments": 805, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000347175.1", "gtdb_species": "s__Leptospira alstonii", "ani": 82.9456, "matched_fragments": 974, "total_fragments": 1326, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.8, "cell_length": 0.954, "doubling_h": 1.009, "growth_tmp": 29.0, "optimum_tmp": 29.0, "optimum_ph": 7.4, "genome_size": 4014565.59, "gc_content": 41.818, "coding_genes": 3786.333, "rRNA16S_genes": 2.0, "tRNA_genes": 37.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, 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