{
    "type": "genome",
    "identifier": "GCF_000315525.1",
    "organism": "Sphingobium yanoikuyae ATCC 51230",
    "title": "Sphingobium yanoikuyae ATCC 51230",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Broad Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000315525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02463913",
        "wgs_master": "AGZU00000000.1",
        "refseq_category": "na",
        "taxid": "883163",
        "species_taxid": "13690",
        "organism_name": "Sphingobium yanoikuyae ATCC 51230",
        "infraspecific_name": "strain=ATCC 51230",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/11/30",
        "asm_name": "Sphi_yano_ATCC_51230_V1",
        "asm_submitter": "Broad Institute",
        "gbrs_paired_asm": "GCA_000315525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/525/GCF_000315525.1_Sphi_yano_ATCC_51230_V1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5532579",
        "genome_size_ungapped": "5500358",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "28",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000315525.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "5217",
        "protein_coding_gene_count": "5071",
        "non_coding_gene_count": "74",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-11-30",
    "dateModified": "2012-11-30",
    "datePublished": "2012-11-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobium yanoikuyae ATCC 51230"
        ],
        "sample_taxid": [
            "883163"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "1.508 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5532579",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "5402660",
        "N50 (bp)": "5402660",
        "Gap Ratio (%)": "0.582387",
        "GCcontent (%)": "64.4",
        "Number of CDSs": "5160",
        "Average Protein Length": "317.9",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "12",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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        "rRNA16S_genes": 2.333,
        "tRNA_genes": 60.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.347,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sphingobium",
        "yanoikuyae",
        "ATCC",
        "51230"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}