{
    "type": "genome",
    "identifier": "GCF_000316285.1",
    "organism": "Paenibacillus sonchi X19-5",
    "title": "Paenibacillus sonchi X19-5",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000316285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02469471",
        "wgs_master": "AJTY00000000.1",
        "refseq_category": "na",
        "taxid": "1173684",
        "species_taxid": "373687",
        "organism_name": "Paenibacillus sonchi X19-5",
        "infraspecific_name": "strain=X19-5",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/03",
        "asm_name": "Paenibacillus sonchi  X19-5T",
        "asm_submitter": "China Agricultural University",
        "gbrs_paired_asm": "GCA_000316285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/316/285/GCF_000316285.1_Paenibacillus_sonchi_X19-5T",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7507281",
        "genome_size_ungapped": "7507281",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "1327",
        "contig_count": "1327",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000316285.1-RS_2024_04_28",
        "annotation_date": "2024-04-28",
        "total_gene_count": "7384",
        "protein_coding_gene_count": "6874",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-03",
    "dateModified": "2012-12-03",
    "datePublished": "2012-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus sonchi X19-5"
        ],
        "sample_taxid": [
            "1173684"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xinjiang"
        ],
        "sample_host_location_id": [],
        "data_size": "2.159 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7507281",
        "Number of Sequences": "1327",
        "Longest Sequences (bp)": "67187",
        "N50 (bp)": "12951",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.4",
        "Number of CDSs": "5894",
        "Average Protein Length": "296.5",
        "Coding Ratio (%)": "69.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenibacillus sonchi",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1966,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus sonchi",
                "strain": "strain=LMG 24727",
                "accession": "GCA_016772475.1",
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                "relation_to_type": "type",
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                "ani": 99.9745,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus riograndensis",
                "strain": "",
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                "species_taxid": 483937,
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                "total_fragments": 1966,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus riograndensis",
                "strain": "strain=SBR5",
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                "species_taxid": 483937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.1607,
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                "total_fragments": 1966,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus jilunlii",
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                "relation_to_type": "type",
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                "matched_fragments": 1642,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus jilunlii",
                "strain": "strain=CGMCC 1.10239",
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                "species_taxid": 682956,
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                "status": "below_threshold"
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            {
                "organism_name": "Paenibacillus azotifigens",
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                "accession": "GCA_008635805.1",
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                "species_taxid": 2047734,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus graminis",
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                "species_taxid": 189425,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus tianjinensis",
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                "taxid": 2810347,
                "species_taxid": 2810347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8632,
                "matched_fragments": 831,
                "total_fragments": 1966,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus piscarius",
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                "accession": "GCA_022234545.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus agri",
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                "accession": "GCA_013359945.1",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Paenibacillus rhizophilus",
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                "accession": "GCA_003854965.1",
                "taxid": 1850366,
                "species_taxid": 1850366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5663,
                "matched_fragments": 404,
                "total_fragments": 1966,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus aceti",
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                "accession": "GCA_003614185.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_014642755.1",
                "taxid": 1820010,
                "species_taxid": 1820010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5689,
                "matched_fragments": 130,
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                "status": "below_threshold"
            }
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        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_016772475.1",
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                "min_intra_species_ani": "99.97",
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            },
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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        ]
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    "_bac2feature": {
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        "growth_tmp": 30.106,
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        "rRNA16S_genes": 10.237,
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    "_genome_taxon": [
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        "X19-5"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}