{
    "type": "genome",
    "identifier": "GCF_000317145.1",
    "organism": "Chamaesiphon minutus PCC 6605",
    "title": "Chamaesiphon minutus PCC 6605",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000317145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261345",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1173020",
        "species_taxid": "1173032",
        "organism_name": "Chamaesiphon minutus PCC 6605",
        "infraspecific_name": "strain=PCC 6605",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/05",
        "asm_name": "ASM31714v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000317145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/145/GCF_000317145.1_ASM31714v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6761765",
        "genome_size_ungapped": "6761665",
        "gc_percent": "45.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000317145.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "6479",
        "protein_coding_gene_count": "6340",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-05",
    "dateModified": "2012-12-05",
    "datePublished": "2012-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chamaesiphon minutus PCC 6605"
        ],
        "sample_taxid": [
            "1173020"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.915 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6761765",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "6284095",
        "N50 (bp)": "6284095",
        "Gap Ratio (%)": "0.001479",
        "GCcontent (%)": "45.7",
        "Number of CDSs": "6040",
        "Average Protein Length": "302.6",
        "Coding Ratio (%)": "81.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Chamaesiphon minutus",
                "strain": "strain=PCC 6605",
                "accession": "GCA_000317145.1",
                "taxid": 1173032,
                "species_taxid": 1173032,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2245,
                "total_fragments": 2252,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Argonema galeatum",
                "strain": "strain=A003/A1",
                "accession": "GCA_023333595.1",
                "taxid": 2942762,
                "species_taxid": 2942762,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5932,
                "matched_fragments": 50,
                "total_fragments": 2252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Argonema antarcticum",
                "strain": "strain=A004/B2",
                "accession": "GCA_023333585.1",
                "taxid": 2942763,
                "species_taxid": 2942763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4791,
                "matched_fragments": 54,
                "total_fragments": 2252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_000317285.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2527,
                "matched_fragments": 57,
                "total_fragments": 2252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_003990575.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0972,
                "matched_fragments": 61,
                "total_fragments": 2252,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000317145.1",
                "gtdb_species": "s__Chamaesiphon minutus",
                "ani": 100.0,
                "matched_fragments": 2245,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Chamaesiphonaceae;g__Chamaesiphon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003003845.1",
                "gtdb_species": "s__Chamaesiphon polymorphus",
                "ani": 88.056,
                "matched_fragments": 1181,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Chamaesiphonaceae;g__Chamaesiphon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000317495.1",
                "gtdb_species": "s__Crinalium epipsammum",
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                "matched_fragments": 50,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Chamaesiphonaceae;g__Crinalium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002218085.1",
                "gtdb_species": "s__Hassallia sp002218085",
                "ani": 76.1351,
                "matched_fragments": 54,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Hassallia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002368235.1",
                "gtdb_species": "s__Tolypothrix_B sp002368235",
                "ani": 75.9992,
                "matched_fragments": 50,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Tolypothrix_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014698115.1",
                "gtdb_species": "s__Nostoc sp014698115",
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                "matched_fragments": 52,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015207705.1",
                "gtdb_species": "s__Anabaenopsis sp015207705",
                "ani": 75.119,
                "matched_fragments": 55,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Anabaenopsis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001904725.1",
                "gtdb_species": "s__Phormidium_B ambiguum",
                "ani": 75.0276,
                "matched_fragments": 50,
                "total_fragments": 2252,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Phormidiaceae_A;g__Phormidium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Chamaesiphon",
        "minutus",
        "PCC",
        "6605"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}