{ "type": "genome", "identifier": "GCF_000317575.1", "organism": "Stanieria cyanosphaera PCC 7437", "title": "Stanieria cyanosphaera PCC 7437", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000317575.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261352", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "111780", "species_taxid": "102116", "organism_name": "Stanieria cyanosphaera PCC 7437", "infraspecific_name": "strain=PCC 7437", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/12/06", "asm_name": "ASM31757v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000317575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/575/GCF_000317575.1_ASM31757v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5544990", "genome_size_ungapped": "5544990", "gc_percent": "36.000000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000317575.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5046", "protein_coding_gene_count": "4862", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-12-06", "dateModified": "2012-12-06", "datePublished": "2012-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Stanieria cyanosphaera PCC 7437" ], "sample_taxid": [ "111780" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Cuba" ], "sample_host_location_id": [], "data_size": "1.550 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5544990", "Number of Sequences": "6", "Longest Sequences (bp)": "5041209", "N50 (bp)": "5041209", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "4918", "Average Protein Length": "312.8", "Coding Ratio (%)": "83.2", "Number of rRNAs": "4", "Number of tRNAs": "43", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stanieria cyanosphaera", "strain": "strain=PCC 7437", "accession": "GCA_000317575.1", "taxid": 102116, "species_taxid": 102116, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1845, "total_fragments": 1846, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Waterburya agarophytonicola", "strain": "strain=KI4", "accession": "GCA_020640915.1", "taxid": 2886916, "species_taxid": 2886916, "relation_to_type": "type", "validated": true, "ani": 76.3732, "matched_fragments": 253, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rippkaea orientalis", "strain": "strain=PCC 8801", "accession": "GCA_000021805.1", "taxid": 2546366, "species_taxid": 2546366, "relation_to_type": "type", "validated": true, "ani": 76.3006, "matched_fragments": 123, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyanobacterium aponinum", "strain": "strain=PCC 10605", "accession": "GCA_000317675.1", "taxid": 379064, "species_taxid": 379064, "relation_to_type": "type", "validated": true, "ani": 76.0842, "matched_fragments": 124, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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