{
    "type": "genome",
    "identifier": "GCF_000317675.1",
    "organism": "Cyanobacterium aponinum PCC 10605",
    "title": "Cyanobacterium aponinum PCC 10605",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000317675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261329",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "755178",
        "species_taxid": "379064",
        "organism_name": "Cyanobacterium aponinum PCC 10605",
        "infraspecific_name": "strain=PCC 10605",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/07",
        "asm_name": "ASM31767v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000317675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/675/GCF_000317675.1_ASM31767v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4176973",
        "genome_size_ungapped": "4176973",
        "gc_percent": "35.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000317675.1-RS_2024_08_19",
        "annotation_date": "2024-08-19",
        "total_gene_count": "3600",
        "protein_coding_gene_count": "3484",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-07",
    "dateModified": "2012-12-07",
    "datePublished": "2012-12-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cyanobacterium aponinum PCC 10605"
        ],
        "sample_taxid": [
            "755178"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.159 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4176973",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4114099",
        "N50 (bp)": "4114099",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.9",
        "Number of CDSs": "3513",
        "Average Protein Length": "323.0",
        "Coding Ratio (%)": "81.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "10"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Cyanobacterium aponinum",
                "strain": "strain=PCC 10605",
                "accession": "GCA_000317675.1",
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                "species_taxid": 379064,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1391,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Stanieria cyanosphaera",
                "strain": "strain=PCC 7437",
                "accession": "GCA_000317575.1",
                "taxid": 102116,
                "species_taxid": 102116,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4898,
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                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crocosphaera chwakensis",
                "strain": "strain=CCY0110",
                "accession": "GCA_000169335.1",
                "taxid": 2546361,
                "species_taxid": 2546361,
                "relation_to_type": "type",
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                "matched_fragments": 105,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000317675.1",
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                "matched_fragments": 1391,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__PCC-10605",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000332235.1",
                "gtdb_species": "s__Geminocystis herdmanii",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__Geminocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001548115.1",
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002813895.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Cyanobacteriaceae;g__Cyanobacterium",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_000317575.1",
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            },
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    },
    "_bac2feature": {
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    },
    "_genome_taxon": [
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        "aponinum",
        "PCC",
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}