{ "type": "genome", "identifier": "GCF_000317835.1", "organism": "Deinococcus peraridilitoris DSM 19664", "title": "Deinococcus peraridilitoris DSM 19664", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000317835.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261392", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "937777", "species_taxid": "432329", "organism_name": "Deinococcus peraridilitoris DSM 19664", "infraspecific_name": "strain=DSM 19664", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/12/10", "asm_name": "ASM31783v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000317835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/317/835/GCF_000317835.1_ASM31783v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4513714", "genome_size_ungapped": "4513714", "gc_percent": "63.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000317835.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4428", "protein_coding_gene_count": "4301", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-12-10", "dateModified": "2012-12-10", "datePublished": "2012-12-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus peraridilitoris DSM 19664" ], "sample_taxid": [ "937777" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile" ], "sample_host_location_id": [], "data_size": "1.259 MB", "sample_ph_range": { "min": 6580.0, "max": 6580.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4513714", "Number of Sequences": "3", "Longest Sequences (bp)": "3881839", "N50 (bp)": "3881839", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "4417", "Average Protein Length": "294.3", "Coding Ratio (%)": "86.4", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus peraridilitoris", "strain": "strain=DSM 19664", "accession": "GCA_000317835.1", "taxid": 432329, "species_taxid": 432329, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1503, "total_fragments": 1503, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Deinococcus pimensis", "strain": "strain=DSM 21231", "accession": "GCA_000519345.1", "taxid": 309888, "species_taxid": 309888, "relation_to_type": "type", "validated": true, "ani": 78.3844, "matched_fragments": 345, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus maricopensis", "strain": "strain=DSM 21211", "accession": "GCA_000186385.1", "taxid": 309887, "species_taxid": 309887, "relation_to_type": "type", "validated": true, "ani": 78.1325, "matched_fragments": 270, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus soli (ex Cha et al. 2016)", "strain": "strain=N5", "accession": "GCA_001007995.1", "taxid": 1309411, "species_taxid": 1309411, "relation_to_type": "type", "validated": true, "ani": 77.9383, "matched_fragments": 218, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus gobiensis", "strain": "strain=I-0", "accession": "GCA_000252445.1", "taxid": 502394, "species_taxid": 502394, "relation_to_type": "type", "validated": true, "ani": 77.8331, "matched_fragments": 257, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus ficus", "strain": "strain=CC-FR2-10", "accession": "GCA_003444775.1", "taxid": 317577, "species_taxid": 317577, "relation_to_type": "type", "validated": true, "ani": 77.726, "matched_fragments": 230, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiodurans", "strain": "strain=ATCC 13939 substr. 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