{
    "type": "genome",
    "identifier": "GCF_000319575.2",
    "organism": "Spiribacter salinus M19-40",
    "title": "Spiribacter salinus M19-40",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Evolutionary Genomics Group, Universidad Miguel Hernandez, San Juan de Alicante, Spain",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000319575.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02603230",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1260251",
        "species_taxid": "1335746",
        "organism_name": "Spiribacter salinus M19-40",
        "infraspecific_name": "strain=M19-40",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/05/24",
        "asm_name": "ASM31957v2",
        "asm_submitter": "Evolutionary Genomics Group, Universidad Miguel Hernandez, San Juan de Alicante, Spain",
        "gbrs_paired_asm": "GCA_000319575.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/319/575/GCF_000319575.2_ASM31957v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1739487",
        "genome_size_ungapped": "1739487",
        "gc_percent": "62.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000319575.2-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "1745",
        "protein_coding_gene_count": "1686",
        "non_coding_gene_count": "52",
        "pubmed_id": "23409269"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-05-24",
    "dateModified": "2013-05-24",
    "datePublished": "2013-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spiribacter salinus M19-40"
        ],
        "sample_taxid": [
            "1260251"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.489 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1739487",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1739487",
        "N50 (bp)": "1739487",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.7",
        "Number of CDSs": "1706",
        "Average Protein Length": "324.5",
        "Coding Ratio (%)": "95.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Spiribacter salinus",
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                "accession": "GCA_000319575.2",
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                "species_taxid": 1335746,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 579,
                "total_fragments": 579,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Spiribacter aquaticus",
                "strain": "strain=SP30",
                "accession": "GCA_007625215.1",
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                "species_taxid": 1935996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7242,
                "matched_fragments": 223,
                "total_fragments": 579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter vilamensis",
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                "accession": "GCA_004217415.1",
                "taxid": 531306,
                "species_taxid": 531306,
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                "ani": 78.1373,
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                "total_fragments": 579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter vilamensis",
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                "accession": "GCA_007625165.1",
                "taxid": 531306,
                "species_taxid": 531306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0478,
                "matched_fragments": 170,
                "total_fragments": 579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter curvatus",
                "strain": "strain=UAH-SP71",
                "accession": "GCA_000485905.1",
                "taxid": 1335757,
                "species_taxid": 1335757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9226,
                "matched_fragments": 196,
                "total_fragments": 579,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylonatrum kenyense",
                "strain": "strain=AMT 1",
                "accession": "GCA_023195885.1",
                "taxid": 455253,
                "species_taxid": 455253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9567,
                "matched_fragments": 71,
                "total_fragments": 579,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000319575.2",
                "gtdb_species": "s__Spiribacter salinus",
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                "matched_fragments": 579,
                "total_fragments": 579,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Spiribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009676705.1",
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                "matched_fragments": 199,
                "total_fragments": 579,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Spiribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002813635.1",
                "gtdb_species": "s__Spiribacter roseus",
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                "total_fragments": 579,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Spiribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_004217415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Spiribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000485905.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003149435.1",
                "gtdb_species": "s__E85 sp003149435",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__E85",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000374645.1",
                "gtdb_species": "s__Arhodomonas aquaeolei",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Arhodomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": 1926630.8,
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        "coding_genes": 1838.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
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        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Spiribacter",
        "salinus",
        "M19-40"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}