{
    "type": "genome",
    "identifier": "GCF_000325705.1",
    "organism": "Echinicola vietnamensis DSM 17526",
    "title": "Echinicola vietnamensis DSM 17526",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000325705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232018",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "926556",
        "species_taxid": "390884",
        "organism_name": "Echinicola vietnamensis DSM 17526",
        "infraspecific_name": "strain=DSM 17526",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/19",
        "asm_name": "ASM32570v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000325705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/325/705/GCF_000325705.1_ASM32570v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5608040",
        "genome_size_ungapped": "5608040",
        "gc_percent": "45.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000325705.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "4501",
        "protein_coding_gene_count": "4414",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-19",
    "dateModified": "2012-12-19",
    "datePublished": "2012-12-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Echinicola vietnamensis DSM 17526"
        ],
        "sample_taxid": [
            "926556"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Viet Nam"
        ],
        "sample_host_location_id": [],
        "data_size": "1.590 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5608040",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5608040",
        "N50 (bp)": "5608040",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.8",
        "Number of CDSs": "4389",
        "Average Protein Length": "362.8",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "12",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Echinicola vietnamensis",
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                "accession": "GCA_000325705.1",
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                "species_taxid": 390884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1868,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Echinicola rosea",
                "strain": "strain=JL3085",
                "accession": "GCA_005281475.1",
                "taxid": 1807691,
                "species_taxid": 1807691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1319,
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                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Echinicola rosea",
                "strain": "strain=CGMCC 1.15407",
                "accession": "GCA_014642715.1",
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                "species_taxid": 1807691,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Echinicola soli",
                "strain": "strain=LN3S3",
                "accession": "GCA_006575665.1",
                "taxid": 2591634,
                "species_taxid": 2591634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3492,
                "matched_fragments": 1099,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Echinicola strongylocentroti",
                "strain": "strain=MEBiC08714",
                "accession": "GCA_003260975.1",
                "taxid": 1795355,
                "species_taxid": 1795355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2714,
                "matched_fragments": 1050,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Echinicola marina",
                "strain": "strain=SCS 3-6",
                "accession": "GCA_020463795.1",
                "taxid": 2859768,
                "species_taxid": 2859768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0562,
                "matched_fragments": 480,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000325705.1",
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                "matched_fragments": 1868,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_005281475.1",
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                "matched_fragments": 1279,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006575665.1",
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                "matched_fragments": 1099,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003260975.1",
                "gtdb_species": "s__Echinicola strongylocentroti",
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                "matched_fragments": 1051,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_015533855.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014841125.1",
                "gtdb_species": "s__Echinicola sp014841125",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014280965.1",
                "gtdb_species": "s__Echinicola sp014280965",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000373245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.041,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 32.0,
        "optimum_ph": 7.0,
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        "coding_genes": 4488.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 44.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Echinicola",
        "vietnamensis",
        "DSM",
        "17526"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}