{
    "type": "genome",
    "identifier": "GCF_000327485.1",
    "organism": "Methanoregula formicica SMSP",
    "title": "Methanoregula formicica SMSP",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000327485.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232038",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "593750",
        "species_taxid": "882104",
        "organism_name": "Methanoregula formicica SMSP",
        "infraspecific_name": "strain=SMSP",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/21",
        "asm_name": "ASM32748v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000327485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/327/485/GCF_000327485.1_ASM32748v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2820858",
        "genome_size_ungapped": "2820858",
        "gc_percent": "55.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000327485.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "2916",
        "protein_coding_gene_count": "2853",
        "non_coding_gene_count": "53",
        "pubmed_id": "25189582"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-21",
    "dateModified": "2012-12-21",
    "datePublished": "2012-12-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanoregula formicica SMSP"
        ],
        "sample_taxid": [
            "593750"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.797 MB",
        "sample_ph_range": {
            "min": 74.0,
            "max": 74.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2820858",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2820858",
        "N50 (bp)": "2820858",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.2",
        "Number of CDSs": "2856",
        "Average Protein Length": "280.3",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methanoregula formicica",
                "strain": "strain=SMSP",
                "accession": "GCA_000327485.1",
                "taxid": 882104,
                "species_taxid": 882104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 940,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanoregula boonei",
                "strain": "strain=6A8",
                "accession": "GCA_000017625.1",
                "taxid": 358766,
                "species_taxid": 358766,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8732,
                "matched_fragments": 202,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus sediminis",
                "strain": "strain=S3Fa",
                "accession": "GCA_001017125.1",
                "taxid": 1550566,
                "species_taxid": 1550566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1349,
                "matched_fragments": 76,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus chikugoensis",
                "strain": "strain=MG62",
                "accession": "GCA_019669965.1",
                "taxid": 118126,
                "species_taxid": 118126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9355,
                "matched_fragments": 91,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanofollis fontis",
                "strain": "strain=FWC-SCC2",
                "accession": "GCA_004297185.1",
                "taxid": 2052832,
                "species_taxid": 2052832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7088,
                "matched_fragments": 68,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus marisnigri",
                "strain": "strain=JR1",
                "accession": "GCA_000015825.1",
                "taxid": 2198,
                "species_taxid": 2198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6962,
                "matched_fragments": 89,
                "total_fragments": 940,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000327485.1",
                "gtdb_species": "s__Methanoregula formicica",
                "ani": 100.0,
                "matched_fragments": 940,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002835825.1",
                "gtdb_species": "s__Methanoregula sp002835825",
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                "matched_fragments": 404,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002839605.1",
                "gtdb_species": "s__Methanoregula sp002839605",
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                "matched_fragments": 349,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002508495.1",
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                "matched_fragments": 228,
                "total_fragments": 940,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "matched_fragments": 320,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
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                "mean_intra_species_ani": "99.51",
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
                "accession": "GCA_003157895.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
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                "mean_intra_species_ani": "98.97",
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            },
            {
                "accession": "GCA_015660885.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanoregula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
        "cell_length": -0.097,
        "doubling_h": 1.643,
        "growth_tmp": 28.0,
        "optimum_tmp": 36.333,
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        "gc_content": 54.5,
        "coding_genes": 2483.667,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanoregula",
        "formicica",
        "SMSP"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}