{ "type": "genome", "identifier": "GCF_000328525.1", "organism": "Halovivax ruber XH-70", "title": "Halovivax ruber XH-70", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000328525.1", "bioproject": "PRJNA224116", "biosample": "SAMN02232030", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "797302", "species_taxid": "387341", "organism_name": "Halovivax ruber XH-70", "infraspecific_name": "strain=XH-70", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/12/27", "asm_name": "ASM32852v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000328525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/328/525/GCF_000328525.1_ASM32852v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3223876", "genome_size_ungapped": "3223876", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000328525.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "3166", "protein_coding_gene_count": "3078", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-12-27", "dateModified": "2012-12-27", "datePublished": "2012-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Halovivax ruber XH-70" ], "sample_taxid": [ "797302" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.886 MB", "sample_ph_range": { "min": 6090.0, "max": 6090.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3223876", "Number of Sequences": "1", "Longest Sequences (bp)": "3223876", "N50 (bp)": "3223876", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "3094", "Average Protein Length": "296.5", "Coding Ratio (%)": "85.4", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halovivax ruber", "strain": "strain=XH-70", "accession": "GCA_000328525.1", "taxid": 387341, "species_taxid": 387341, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1073, "total_fragments": 1074, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halovivax asiaticus", "strain": "strain=JCM 14624", "accession": "GCA_000337515.1", "taxid": 332953, "species_taxid": 332953, "relation_to_type": "type", "validated": true, "ani": 93.1948, "matched_fragments": 897, "total_fragments": 1074, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovivax cerinus", "strain": "strain=IBRC-M 10256", "accession": "GCA_024498195.1", "taxid": 1487865, "species_taxid": 1487865, "relation_to_type": "type", "validated": true, "ani": 84.4826, "matched_fragments": 780, "total_fragments": 1074, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovivax limisalsi", "strain": "strain=IBRC-M 10022", "accession": "GCA_023093535.1", "taxid": 1453760, "species_taxid": 1453760, "relation_to_type": "type", "validated": true, "ani": 81.3529, "matched_fragments": 638, "total_fragments": 1074, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena 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