{
    "type": "genome",
    "identifier": "GCF_000328665.1",
    "organism": "Methanomethylovorans hollandica DSM 15978",
    "title": "Methanomethylovorans hollandica DSM 15978",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000328665.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261367",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "867904",
        "species_taxid": "101192",
        "organism_name": "Methanomethylovorans hollandica DSM 15978",
        "infraspecific_name": "strain=DSM 15978",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/28",
        "asm_name": "ASM32866v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000328665.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/328/665/GCF_000328665.1_ASM32866v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2714013",
        "genome_size_ungapped": "2714013",
        "gc_percent": "42.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000328665.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2701",
        "protein_coding_gene_count": "2605",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-28",
    "dateModified": "2012-12-28",
    "datePublished": "2012-12-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanomethylovorans hollandica DSM 15978"
        ],
        "sample_taxid": [
            "867904"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.769 MB",
        "sample_ph_range": {
            "min": 6570.0,
            "max": 6570.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2714013",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2428904",
        "N50 (bp)": "2428904",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.9",
        "Number of CDSs": "2619",
        "Average Protein Length": "294.9",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanomethylovorans hollandica",
                "strain": "strain=DSM 15978",
                "accession": "GCA_000328665.1",
                "taxid": 101192,
                "species_taxid": 101192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 904,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanolobus zinderi",
                "strain": "strain=DSM 21339",
                "accession": "GCA_013388255.1",
                "taxid": 536044,
                "species_taxid": 536044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3148,
                "matched_fragments": 73,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides burtonii",
                "strain": "strain=DSM 6242",
                "accession": "GCA_000013725.1",
                "taxid": 29291,
                "species_taxid": 29291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2142,
                "matched_fragments": 57,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus profundi",
                "strain": "strain=Mob M",
                "accession": "GCA_900114835.1",
                "taxid": 487685,
                "species_taxid": 487685,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7446,
                "matched_fragments": 71,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus vulcani",
                "strain": "strain=PL 12/M",
                "accession": "GCA_900100715.1",
                "taxid": 38026,
                "species_taxid": 38026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7421,
                "matched_fragments": 74,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus halotolerans",
                "strain": "strain=SY-01",
                "accession": "GCA_004745425.1",
                "taxid": 2052935,
                "species_taxid": 2052935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6605,
                "matched_fragments": 59,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides seepicolus",
                "strain": "strain=LLY",
                "accession": "GCA_023684405.1",
                "taxid": 2828780,
                "species_taxid": 2828780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.602,
                "matched_fragments": 53,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000328665.1",
                "gtdb_species": "s__Methanomethylovorans hollandica",
                "ani": 100.0,
                "matched_fragments": 904,
                "total_fragments": 904,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.56",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002067275.1",
                "gtdb_species": "s__Methanomethylovorans sp002067275",
                "ani": 85.9151,
                "matched_fragments": 534,
                "total_fragments": 904,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001896725.1",
                "gtdb_species": "s__Methanomethylovorans sp001896725",
                "ani": 82.0328,
                "matched_fragments": 507,
                "total_fragments": 904,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002508425.1",
                "gtdb_species": "s__Methanomethylovorans sp002508425",
                "ani": 81.4215,
                "matched_fragments": 467,
                "total_fragments": 904,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002067265.1",
                "gtdb_species": "s__Methanomethylovorans sp002067265",
                "ani": 81.2935,
                "matched_fragments": 306,
                "total_fragments": 904,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014361205.1",
                "gtdb_species": "s__Methanomethylovorans sp014361205",
                "ani": 79.291,
                "matched_fragments": 351,
                "total_fragments": 904,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": 1.06,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.8,
        "optimum_ph": 6.75,
        "genome_size": 2714012.4,
        "gc_content": 39.702,
        "coding_genes": 2533.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanomethylovorans",
        "hollandica",
        "DSM",
        "15978"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}