{
    "type": "genome",
    "identifier": "GCF_000328765.2",
    "organism": "Tepidanaerobacter acetatoxydans Re1",
    "title": "Tepidanaerobacter acetatoxydans Re1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "HGEN",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000328765.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2272437",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1209989",
        "species_taxid": "499229",
        "organism_name": "Tepidanaerobacter acetatoxydans Re1",
        "infraspecific_name": "strain=Re1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/10/16",
        "asm_name": "ASM32876v2",
        "asm_submitter": "HGEN",
        "gbrs_paired_asm": "GCA_000328765.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/328/765/GCF_000328765.2_ASM32876v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2761252",
        "genome_size_ungapped": "2761252",
        "gc_percent": "37.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-12",
        "total_gene_count": "2679",
        "protein_coding_gene_count": "2592",
        "non_coding_gene_count": "62",
        "pubmed_id": "23469343"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-10-16",
    "dateModified": "2013-10-16",
    "datePublished": "2013-10-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tepidanaerobacter acetatoxydans Re1"
        ],
        "sample_taxid": [
            "1209989"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.777 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2761252",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2761252",
        "N50 (bp)": "2761252",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.5",
        "Number of CDSs": "2644",
        "Average Protein Length": "303.3",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tepidanaerobacter acetatoxydans",
                "strain": "strain=Re1",
                "accession": "GCA_000328765.2",
                "taxid": 499229,
                "species_taxid": 499229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 920,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tepidanaerobacter acetatoxydans",
                "strain": "strain=Re1",
                "accession": "GCA_000213235.1",
                "taxid": 499229,
                "species_taxid": 499229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.996,
                "matched_fragments": 919,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tepidanaerobacter syntrophicus",
                "strain": "strain=JL",
                "accession": "GCA_001485475.2",
                "taxid": 224999,
                "species_taxid": 224999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8601,
                "matched_fragments": 274,
                "total_fragments": 920,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000328765.2",
                "gtdb_species": "s__Tepidanaerobacter acetatoxydans",
                "ani": 100.0,
                "matched_fragments": 920,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermosediminibacteria;o__Thermosediminibacterales;f__Tepidanaerobacteraceae;g__Tepidanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "95.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001896545.1",
                "gtdb_species": "s__Tepidanaerobacter sp001896545",
                "ani": 94.6779,
                "matched_fragments": 628,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermosediminibacteria;o__Thermosediminibacterales;f__Tepidanaerobacteraceae;g__Tepidanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001485475.2",
                "gtdb_species": "s__Tepidanaerobacter syntrophicus",
                "ani": 81.9163,
                "matched_fragments": 276,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermosediminibacteria;o__Thermosediminibacterales;f__Tepidanaerobacteraceae;g__Tepidanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_012839145.1",
                "gtdb_species": "s__DUNY01 sp012839145",
                "ani": 78.1358,
                "matched_fragments": 213,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermosediminibacteria;o__Thermosediminibacterales;f__Tepidanaerobacteraceae;g__DUNY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001512695.1",
                "gtdb_species": "s__DTU063 sp001512695",
                "ani": 76.8734,
                "matched_fragments": 91,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermosediminibacteria;o__Thermosediminibacterales;f__Tepidanaerobacteraceae;g__DTU063",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_012842445.1",
                "gtdb_species": "s__DTU063 sp012842445",
                "ani": 76.586,
                "matched_fragments": 109,
                "total_fragments": 920,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Thermosediminibacteria;o__Thermosediminibacterales;f__Tepidanaerobacteraceae;g__DTU063",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.75,
        "optimum_ph": 7.0,
        "genome_size": 2760886.167,
        "gc_content": 37.5,
        "coding_genes": 2566.6,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 52.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Tepidanaerobacter",
        "acetatoxydans",
        "Re1"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}