{ "type": "genome", "identifier": "GCF_000330705.1", "organism": "Salinicoccus carnicancri Crm", "title": "Salinicoccus carnicancri Crm", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000330705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470212", "wgs_master": "ANAM00000000.1", "refseq_category": "reference genome", "taxid": "1235755", "species_taxid": "558170", "organism_name": "Salinicoccus carnicancri Crm", "infraspecific_name": "strain=Crm", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/01/02", "asm_name": "Crm", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_000330705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/330/705/GCF_000330705.1_Crm", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2669034", "genome_size_ungapped": "2669034", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000330705.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2749", "protein_coding_gene_count": "2662", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-01-02", "dateModified": "2013-01-02", "datePublished": "2013-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinicoccus carnicancri Crm" ], "sample_taxid": [ "1235755" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.758 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2669034", "Number of Sequences": "12", "Longest Sequences (bp)": "873136", "N50 (bp)": "637917", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.9", "Number of CDSs": "2683", "Average Protein Length": "297.7", "Coding Ratio (%)": "89.8", "Number of rRNAs": "9", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinicoccus carnicancri", "strain": "strain=Crm", "accession": "GCA_000330705.1", "taxid": 558170, "species_taxid": 558170, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 884, "total_fragments": 884, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinicoccus sediminis", "strain": "strain=SV-16", "accession": "GCA_000986795.1", "taxid": 1432562, "species_taxid": 1432562, "relation_to_type": "type", "validated": true, "ani": 93.1785, "matched_fragments": 753, "total_fragments": 884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicoccus halodurans", "strain": "strain=CGMCC 1.6501", "accession": "GCA_900114445.1", "taxid": 407035, "species_taxid": 407035, "relation_to_type": "type", "validated": true, "ani": 81.622, "matched_fragments": 568, "total_fragments": 884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicoccus luteus", "strain": "strain=DSM 17002", "accession": "GCA_000712035.1", "taxid": 367840, "species_taxid": 367840, "relation_to_type": "type", "validated": true, "ani": 78.5515, "matched_fragments": 244, "total_fragments": 884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicoccus 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"gtdb_result": [ { "accession": "GCF_000330705.1", "gtdb_species": "s__Salinicoccus carnicancri", "ani": 100.0, "matched_fragments": 883, "total_fragments": 884, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000986795.1", "gtdb_species": "s__Salinicoccus sediminis", "ani": 93.1785, "matched_fragments": 753, "total_fragments": 884, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019113295.1", 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78.5515, "matched_fragments": 244, "total_fragments": 884, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009831115.1", "gtdb_species": "s__Salinicoccus hispanicus", "ani": 78.1357, "matched_fragments": 214, "total_fragments": 884, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Salinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007713705.1", "gtdb_species": "s__Salinicoccus cyprini", "ani": 77.9913, "matched_fragments": 233, "total_fragments": 884, 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