# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_34	LOCUS_00340	sequence01:39398..39760(+)	frameshift		39730	WP_000076404.1	protein deglycase HchA	92.5	38.0	100.0
MGA_35	LOCUS_00350	sequence01:39727..40275(+)	frameshift		39733	WP_000076404.1	protein deglycase HchA	98.9	61.6	98.3
MGA_46	LOCUS_00460	sequence01:49554..52541(+)	partial			WP_001060462.1	MSCRAMM family adhesin SdrC	72.1	75.2	94.7
MGA_77	LOCUS_00770	sequence01:88416..88757(+)	partial			WP_000798967.1	DUF1450 domain-containing protein	69.0	69.0	100.0
MGA_91	LOCUS_00910	sequence01:100147..100392(+)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	66.7	11.6	57.4
MGA_182	LOCUS_01820	sequence01:191191..191475(-)	partial			WP_001801730.1	hypothetical protein	90.4	73.9	100.0
MGA_246	LOCUS_02460	sequence02:35627..35959(+)	internal_stop_codon	35957..35959(+)		WP_000538141.1	HD domain-containing protein	100.0	50.9	97.3
MGA_247	LOCUS_02470	sequence02:36047..36277(+)	internal_stop_codon	35957..35959(+)		WP_000538141.1	HD domain-containing protein	100.0	35.2	98.7
MGA_279	LOCUS_02790	sequence02:71927..74656(+)	partial			WP_001056195.1	MSCRAMM family adhesin clumping factor ClfA	61.5	56.5	82.6
MGA_280	LOCUS_02800	sequence02:74877..74996(+)	frameshift		74990	WP_000791702.1	von Willebrand factor binding protein Vwb	94.9	7.4	97.3
MGA_322	LOCUS_03220	sequence02:106579..107346(+)	partial			WP_001148557.1	phage antirepressor KilAC domain-containing protein	73.3	72.2	88.2
MGA_335	LOCUS_03350	sequence02:111922..112692(+)	partial			WP_000190248.1	DnaD domain protein	38.3	39.1	43.9
MGA_501	LOCUS_05010	sequence02:273884..274099(-)	partial			WP_001788574.1	NINE protein	100.0	74.0	97.2
MGA_539	LOCUS_05390	sequence02:317258..317392(-)	partial			WP_000064214.1	glycopeptide resistance-associated protein GraF	54.5	54.5	100.0
MGA_616	LOCUS_06160	sequence02:395370..395696(+)	internal_stop_codon	395694..395696(+)		WP_000584398.1	hypothetical protein	91.7	58.9	87.9
MGA_655	LOCUS_06550	sequence02:434142..434351(-)	partial			WP_126475239.1	IS1182 family transposase	82.6	10.5	94.7
MGA_674	LOCUS_06740	sequence02:456248..456451(-)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	100.0
MGA_702	LOCUS_07020	sequence02:485246..486604(-)	partial			WP_000915238.1	lipoteichoic acid-specific glycosyltransferase YfhO	100.0	52.1	93.4
MGA_774	LOCUS_07740	sequence02:571827..572411(+)	partial			WP_002485350.1	minor capsid protein	68.6	35.5	56.0
MGA_778	LOCUS_07780	sequence02:573885..574175(+)	internal_stop_codon	573873..573875(+),573792..573794(+)		WP_002485350.1	minor capsid protein	94.8	22.8	45.1
MGA_780	LOCUS_07800	sequence02:574430..574771(+)	partial			WP_002485350.1	minor capsid protein	100.0	25.2	71.7
MGA_854	LOCUS_08540	sequence02:655995..656291(+)	partial			WP_126475239.1	IS1182 family transposase	99.0	17.8	95.9
MGA_870	LOCUS_08700	sequence02:671912..672106(-)	frameshift		672153	WP_126475239.1	IS1182 family transposase	100.0	11.7	98.4
MGA_871	LOCUS_08710	sequence02:672124..672516(-)	frameshift		672153	WP_126475239.1	IS1182 family transposase	67.7	16.1	86.4
MGA_951	LOCUS_09510	sequence03:113649..113855(-)	partial			WP_001033761.1	hypothetical protein	92.6	8.8	63.5
MGA_1040	LOCUS_10400	sequence03:195279..195455(-)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_1087	LOCUS_10870	sequence03:243123..243269(-)	partial			WP_000009238.1	SAS049 family protein	72.9	72.9	100.0
MGA_1182	LOCUS_11820	sequence04:38567..39322(+)	frameshift		39160	WP_000184370.1	transglycosylase domain-containing protein	78.9	65.8	94.9
MGA_1183	LOCUS_11830	sequence04:39271..39471(+)	frameshift		39160	WP_000184370.1	transglycosylase domain-containing protein	100.0	21.9	98.5
MGA_1191	LOCUS_11910	sequence04:51921..52961(-)	partial			WP_000193903.1	hypothetical protein	84.1	62.4	73.2
MGA_1216	LOCUS_12160	sequence04:87185..87409(-)	frameshift		87432,87237	WP_126475239.1	IS1182 family transposase	78.4	12.3	82.1
MGA_1258	LOCUS_12580	sequence06:17119..17262(-)	frameshift,internal_stop_codon	17119..17121(-)	17109	WP_000159787.1	transposase	89.4	46.7	76.2
MGA_1259	LOCUS_12590	sequence06:18132..18509(-)	partial			WP_010989411.1	DUF1433 domain-containing protein	74.4	66.9	44.1
MGA_1260	LOCUS_12600	sequence06:19029..23141(-)	partial			WP_011391500.1	hypothetical protein	48.8	43.2	26.4
MGA_1273	LOCUS_12730	sequence06:36189..37562(-)	partial			WP_000699969.1	S8 family serine peptidase	69.1	55.1	38.9
MGA_1274	LOCUS_12740	sequence06:37572..38090(-)	partial			WP_010880496.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	77.9	35.3	38.0
MGA_1275	LOCUS_12750	sequence06:38106..39350(-)	partial			WP_011026975.1	lanthionine synthetase C family protein	75.1	69.1	24.1
MGA_1408	LOCUS_14050	sequence07:95055..95402(+)	frameshift		94993,95270	WP_000179343.1	tyrosine-type recombinase/integrase	100.0	29.7	54.2
MGA_1412	LOCUS_14090	sequence07:98543..99802(-)	partial			WP_000120296.1	SdrH family protein	53.9	54.5	95.1
MGA_1489	LOCUS_14850	sequence09:11477..11830(-)	partial			WP_001801792.1	ATP synthase subunit I	83.8	65.3	98.0
MGA_1527	LOCUS_15230	sequence09:50185..50394(-)	frameshift,internal_stop_codon	50185..50187(-)	50365	WP_010925589.1	recombinase family protein	84.1	53.6	73.3
MGA_1587	LOCUS_15820	sequence11:29477..30613(-)	partial			WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	88.6	46.2	23.4
MGA_1589	LOCUS_15840	sequence11:31418..31711(-)	frameshift		31710	WP_010939452.1	DEAD/DEAH box helicase family protein	96.9	6.1	47.4
MGA_1590	LOCUS_15850	sequence11:31708..32805(-)	frameshift		33034,32908,31710	WP_011202675.1	DEAD/DEAH box helicase family protein	100.0	24.7	33.1
MGA_1733	LOCUS_17260	sequence12:46792..47148(+)	partial			WP_126475239.1	IS1182 family transposase	87.3	18.9	94.2
MGA_1762	LOCUS_17550	sequence12:78162..78800(+)	internal_stop_codon	78798..78800(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	69.7	99.1
MGA_1763	LOCUS_17560	sequence12:78870..79076(+)	internal_stop_codon	78798..78800(+)		WP_000276759.1	DUF2268 domain-containing protein	100.0	22.4	100.0
MGA_1860	LOCUS_18530	sequence12:179786..180067(-)	frameshift		180081	WP_001044255.1	membrane protein	100.0	21.1	96.8
MGA_1861	LOCUS_18540	sequence12:179998..181110(-)	frameshift		180078	WP_001044255.1	membrane protein	93.0	78.0	87.5
MGA_1869	LOCUS_18620	sequence12:189373..189543(-)	partial			WP_001795286.1	hypothetical protein	100.0	72.7	92.9
MGA_1871	LOCUS_18640	sequence12:191164..>191890(-)	partial			WP_011082576.1	accumulation-associated protein Aap	86.3	14.5	54.5
MGA_1889	LOCUS_18810	sequence13:23586..24050(-)	partial			WP_011948695.1	MarR family transcriptional regulator	85.1	73.0	38.2
MGA_1951	LOCUS_19430	sequence13:90801..91121(+)	partial			WP_001795157.1	hypothetical protein	100.0	63.9	99.1
MGA_1991	LOCUS_19830	sequence13:128786..129472(-)	partial			WP_003894962.1	MBL fold metallo-hydrolase	61.4	67.3	30.8
MGA_2008	LOCUS_20000	sequence13:149365..151998(-)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	62.9	62.9	97.6
MGA_2032	LOCUS_20240	sequence13:186326..186697(-)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	55.3	3.0	92.6
MGA_2033	LOCUS_20250	sequence13:186678..187442(+)	internal_stop_codon	187440..187442(+),186588..186590(+),186525..186527(+),186582..186584(+)		WP_002485492.1	hypothetical protein	63.0	29.8	34.1
MGA_2034	LOCUS_20260	sequence13:187566..188774(+)	internal_stop_codon	188850..188852(+),188952..188954(+),188772..188774(+),187440..187442(+)		WP_002485492.1	hypothetical protein	99.0	73.8	38.0
MGA_2035	LOCUS_20270	sequence13:189054..189854(+)	internal_stop_codon	189852..189854(+),190026..190028(+),189942..189944(+),188850..188852(+),188952..188954(+),189042..189044(+),188772..188774(+)		WP_002485492.1	hypothetical protein	99.2	50.8	40.7
MGA_2036	LOCUS_20280	sequence13:190032..190310(+)	internal_stop_codon	189852..189854(+),190026..190028(+),190308..190310(+),189942..189944(+)		WP_002485492.1	hypothetical protein	95.7	19.6	41.7
MGA_2037	LOCUS_20290	sequence13:190320..190844(+)	internal_stop_codon	190842..190844(+),190308..190310(+)		WP_002485492.1	hypothetical protein	98.3	42.4	39.6
MGA_2055	LOCUS_20470	sequence13:208196..208408(-)	partial			WP_000837587.1	hypothetical protein	64.3	76.3	95.6
MGA_2056	LOCUS_20480	sequence13:208568..209200(-)	frameshift		209214	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	100.0
MGA_2057	LOCUS_20490	sequence13:209197..209955(-)	frameshift		209211	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	98.4	53.7	100.0
MGA_2087	LOCUS_20790	sequence13:237434..237844(+)	frameshift		237814	WP_002305939.1	IS30 family transposase	97.1	41.4	67.4
MGA_2089	LOCUS_20810	sequence13:238480..238830(+)	partial			WP_002305939.1	IS30 family transposase	89.7	32.6	70.2
MGA_2101	LOCUS_20930	sequence13:247406..247543(-)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_2127	LOCUS_21190	sequence13:284302..284754(-)	partial			WP_001827266.1	tRNA-dihydrouridine synthase	100.0	48.4	96.0
MGA_2154	LOCUS_21460	sequence13:316114..316368(+)	partial			WP_000577184.1	GntR family transcriptional regulator	94.0	34.9	40.7
MGA_2155	LOCUS_21470	sequence13:316396..317511(+)	internal_stop_codon	316366..316368(+)		WP_003244019.1	PLP-dependent aminotransferase family protein	100.0	77.0	37.2
MGA_2174	LOCUS_21660	sequence13:338832..339173(+)	partial			WP_000414629.1	MFS transporter	100.0	54.3	98.2
MGA_2195	LOCUS_21870	sequence13:360445..360639(+)	partial			WP_000469833.1	XRE family transcriptional regulator	100.0	16.4	98.4
MGA_2196	LOCUS_21880	sequence13:361012..361497(+)	frameshift		361425	WP_011117535.1	replication initiation factor domain-containing protein	89.4	49.0	73.3
MGA_2197	LOCUS_21890	sequence13:361482..361772(+)	frameshift		361425	WP_011117535.1	replication initiation factor domain-containing protein	99.0	31.0	63.2
MGA_2199	LOCUS_21910	sequence13:362796..363017(+)	frameshift,internal_stop_codon	362581..362583(+)	362787	WP_000093392.1	IS200/IS605 family transposase	87.7	39.8	98.4
MGA_2250	LOCUS_22420	sequence13:429450..430358(+)	partial			WP_001796914.1	ABC transporter permease	100.0	61.4	93.0
MGA_2344	LOCUS_23360	sequence13:540001..540153(+)	frameshift		540144	WP_000141941.1	TIGR01741 family protein	96.0	28.9	87.5
MGA_2345	LOCUS_23370	sequence13:540197..540496(+)	frameshift		540144	WP_000141941.1	TIGR01741 family protein	100.0	59.6	81.8
MGA_2400	LOCUS_23920	sequence13:593195..593674(-)	partial			WP_010922821.1	twin-arginine translocase subunit TatC	100.0	72.3	92.5
MGA_2423	LOCUS_24150	sequence13:614436..614747(-)	frameshift		614844,614739,615012,614643	WP_047210621.1	site-specific integrase	75.7	19.2	66.7
MGA_2424	LOCUS_24160	sequence13:614825..614983(-)	frameshift		615104,614738,615011,614651,614846	WP_047210621.1	site-specific integrase	88.5	11.3	84.8
MGA_2457	LOCUS_24490	sequence13:645570..646265(+)	partial			WP_000705657.1	superantigen-like protein SSL4	92.2	72.6	42.3
MGA_2469	LOCUS_24610	sequence13:658568..659041(+)	frameshift		659032,659315	WP_001557596.1	tandem-type lipoprotein	88.5	51.9	83.5
MGA_2470	LOCUS_24620	sequence13:659157..659375(+)	frameshift		659032,659315	WP_001557596.1	tandem-type lipoprotein	98.6	26.2	78.9
MGA_2556	LOCUS_25460	sequence16:4615..4950(+)	partial			WP_031588332.1	recombinase family protein	100.0	55.8	99.1
MGA_2580	LOCUS_25700	sequence16:25606..>26308(-)	partial			WP_126475239.1	IS1182 family transposase	100.0	42.8	97.4
