{ "type": "genome", "identifier": "GCF_000330945.1", "organism": "Clostridium pasteurianum DSM 525 = ATCC 6013", "title": "Clostridium pasteurianum DSM 525 = ATCC 6013", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Bioprocess and Biosystems Engineering", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000330945.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469956", "wgs_master": "ANZB00000000.1", "refseq_category": "na", "taxid": "1262449", "species_taxid": "1501", "organism_name": "Clostridium pasteurianum DSM 525 = ATCC 6013", "infraspecific_name": "strain=DSM 525", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/01/03", "asm_name": "Cpasteurianum_V1", "asm_submitter": "Institute of Bioprocess and Biosystems Engineering", "gbrs_paired_asm": "GCA_000330945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/330/945/GCF_000330945.1_Cpasteurianum_V1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4285687", "genome_size_ungapped": "4285687", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000330945.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "4076", "protein_coding_gene_count": "3930", "non_coding_gene_count": "83", "pubmed_id": "23469350" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-01-03", "dateModified": "2013-01-03", "datePublished": "2013-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium pasteurianum DSM 525 = ATCC 6013" ], "sample_taxid": [ "1262449" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.169 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4285687", "Number of Sequences": "37", "Longest Sequences (bp)": "578950", "N50 (bp)": "229401", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.8", "Number of CDSs": "3998", "Average Protein Length": "296.9", "Coding Ratio (%)": "83.1", "Number of rRNAs": "4", "Number of tRNAs": "74", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium pasteurianum", "strain": "strain=DSM 525", "accession": "GCA_000330945.1", "taxid": 1501, "species_taxid": 1501, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 7320", "accession": "GCA_002006215.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 77.0282, "matched_fragments": 184, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 794", "accession": "GCA_002006355.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 76.8193, "matched_fragments": 177, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviitalea phaphyphila", "strain": "strain=Alg1", "accession": "GCA_001466305.1", "taxid": 1473580, "species_taxid": 1473580, "relation_to_type": "type", "validated": true, "ani": 75.0712, "matched_fragments": 96, "total_fragments": 1411, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000807255.1", "gtdb_species": "s__Clostridium_I pasteurianum", "ani": 99.9818, "matched_fragments": 1406, "total_fragments": 1411, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.90", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_000389635.1", "gtdb_species": "s__Clostridium_I pasteurianum_A", "ani": 82.5806, "matched_fragments": 878, "total_fragments": 1411, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Clostridium", "pasteurianum", "DSM", "525", "=", "ATCC", "6013" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }