{ "type": "genome", "identifier": "GCF_000332355.1", "organism": "Baaleninema simplex PCC 7105", "title": "Baaleninema simplex PCC 7105", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000332355.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261249", "wgs_master": "ANFQ00000000.1", "refseq_category": "reference genome", "taxid": "102127", "species_taxid": "2862350", "organism_name": "Baaleninema simplex PCC 7105", "infraspecific_name": "strain=PCC 7105", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/01/22", "asm_name": "ASM33235v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000332355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/332/355/GCF_000332355.1_ASM33235v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6152351", "genome_size_ungapped": "6126551", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "266", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000332355.1-RS_2024_09_22", "annotation_date": "2024-09-22", "total_gene_count": "5373", "protein_coding_gene_count": "5029", "non_coding_gene_count": "60", "pubmed_id": "23277585" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-01-22", "dateModified": "2013-01-22", "datePublished": "2013-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Baaleninema simplex PCC 7105" ], "sample_taxid": [ "102127" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.712 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6152351", "Number of Sequences": "8", "Longest Sequences (bp)": "3980564", "N50 (bp)": "3980564", "Gap Ratio (%)": "0.419384", "GCcontent (%)": "51.6", "Number of CDSs": "4967", "Average Protein Length": "327.6", "Coding Ratio (%)": "79.3", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "21" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Baaleninema simplex", "strain": "strain=PCC 7105", "accession": "GCA_000332355.1", "taxid": 2862350, "species_taxid": 2862350, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 2036, "total_fragments": 2047, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kovacikia minuta", "strain": "strain=CCNU0001", "accession": "GCA_020091585.1", "taxid": 2931930, "species_taxid": 2931930, "relation_to_type": "type", "validated": true, "ani": 75.8941, "matched_fragments": 52, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Argonema antarcticum", "strain": "strain=A004/B2", "accession": "GCA_023333585.1", "taxid": 2942763, "species_taxid": 2942763, "relation_to_type": "type", "validated": true, "ani": 75.6791, "matched_fragments": 57, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Argonema galeatum", "strain": "strain=A003/A1", "accession": "GCA_023333595.1", "taxid": 2942762, "species_taxid": 2942762, "relation_to_type": "type", "validated": true, "ani": 75.5515, "matched_fragments": 70, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000332355.1", "gtdb_species": "s__Geitlerinema sp000332355", "ani": 99.9999, "matched_fragments": 2037, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Geitlerinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001657325.1", "gtdb_species": "s__Geitlerinema sp001657325", "ani": 79.0578, "matched_fragments": 814, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Geitlerinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.73", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009846485.1", "gtdb_species": "s__Phormidium_A sp009846485", "ani": 77.6515, "matched_fragments": 259, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001637315.1", "gtdb_species": "s__Phormidium_A willei_A", "ani": 77.5456, "matched_fragments": 242, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.56", "min_intra_species_ani": "95.56", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004299065.1", "gtdb_species": "s__Phormidium_A sp004299065", "ani": 77.5329, "matched_fragments": 232, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012911965.1", "gtdb_species": "s__Phormidium_A sp007126595", "ani": 77.3477, "matched_fragments": 223, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_001314905.1", "gtdb_species": "s__Phormidium_A sp001314905", "ani": 77.0826, "matched_fragments": 277, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007693465.1", "gtdb_species": "s__Phormidium_A sp007693465", "ani": 76.9648, "matched_fragments": 218, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000972705.2", "gtdb_species": "s__Lyngbya robusta", "ani": 76.3232, "matched_fragments": 55, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Lyngbya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697025.1", "gtdb_species": "s__MUGG01 sp014697025", "ani": 76.261, "matched_fragments": 57, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__MUGG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015207075.1", "gtdb_species": "s__LEGE-11467 sp015207075", "ani": 76.0533, "matched_fragments": 105, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__LEGE-11467", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014695715.1", "gtdb_species": "s__FACHB-68 sp014695715", "ani": 75.8213, "matched_fragments": 51, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Oscillatoriaceae_A;g__FACHB-68", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012034575.1", "gtdb_species": "s__Microcoleus sp012034575", "ani": 75.7329, "matched_fragments": 82, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000478195.2", "gtdb_species": "s__Lyngbya aestuarii", "ani": 75.6181, "matched_fragments": 70, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Lyngbya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012031415.1", "gtdb_species": "s__JAAUTN01 sp012031415", "ani": 75.4827, "matched_fragments": 61, "total_fragments": 2047, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__JAAUTN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Baaleninema", "simplex", "PCC", "7105" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }