{ "type": "genome", "identifier": "GCF_000333035.1", "organism": "Gordonia sihwensis NBRC 108236", "title": "Gordonia sihwensis NBRC 108236", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000333035.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041808", "wgs_master": "BANU00000000.1", "refseq_category": "na", "taxid": "1223544", "species_taxid": "173559", "organism_name": "Gordonia sihwensis NBRC 108236", "infraspecific_name": "strain=NBRC 108236", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/01/11", "asm_name": "ASM33303v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000333035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/333/035/GCF_000333035.1_ASM33303v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4140890", "genome_size_ungapped": "4140890", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000333035.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3944", "protein_coding_gene_count": "3817", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-01-11", "dateModified": "2013-01-11", "datePublished": "2013-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia sihwensis NBRC 108236" ], "sample_taxid": [ "1223544" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.128 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4140890", "Number of Sequences": "64", "Longest Sequences (bp)": "309151", "N50 (bp)": "140402", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "3892", "Average Protein Length": "321.8", "Coding Ratio (%)": "90.7", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia sihwensis", "strain": "strain=NBRC 108236", "accession": "GCA_000333035.1", "taxid": 173559, "species_taxid": 173559, 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"matched_fragments": 848, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia shandongensis", "strain": "strain=DSM 45094", "accession": "GCA_000423025.1", "taxid": 376351, "species_taxid": 376351, "relation_to_type": "type", "validated": true, "ani": 80.8997, "matched_fragments": 712, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia spumicola", "strain": "strain=NBRC 107696", "accession": "GCA_009932475.1", "taxid": 589161, "species_taxid": 589161, "relation_to_type": "type", "validated": true, "ani": 80.7228, "matched_fragments": 741, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia humi", "strain": "strain=DSM 45298", "accession": "GCA_014197435.1", "taxid": 686429, "species_taxid": 686429, "relation_to_type": "type", "validated": true, "ani": 80.2878, "matched_fragments": 704, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amarae", "strain": "strain=NBRC 15530", "accession": "GCA_000241345.2", "taxid": 36821, "species_taxid": 36821, "relation_to_type": "type", "validated": true, "ani": 78.6872, "matched_fragments": 529, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia pseudamarae", "strain": "strain=CON9", "accession": "GCA_025273675.1", "taxid": 2831662, "species_taxid": 2831662, "relation_to_type": "type", "validated": true, "ani": 78.4907, "matched_fragments": 469, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000333035.1", "gtdb_species": "s__Gordonia sihwensis", "ani": 100.0, "matched_fragments": 1343, "total_fragments": 1349, "gtdb_taxonomy": 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