{ "type": "genome", "identifier": "GCF_000334215.1", "organism": "Vreelandella jeotgali Hwa", "title": "Vreelandella jeotgali Hwa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000334215.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470210", "wgs_master": "AMQY00000000.1", "refseq_category": "reference genome", "taxid": "1238190", "species_taxid": "553386", "organism_name": "Vreelandella jeotgali Hwa", "infraspecific_name": "strain=Hwa", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/01/29", "asm_name": "Hwa", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_000334215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/334/215/GCF_000334215.1_Hwa", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2847098", "genome_size_ungapped": "2847098", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000334215.1-RS_2024_08_25", "annotation_date": "2024-08-25", "total_gene_count": "2628", "protein_coding_gene_count": "2519", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-01-29", "dateModified": "2013-01-29", "datePublished": "2013-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella jeotgali Hwa" ], "sample_taxid": [ "1238190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.794 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2847098", "Number of Sequences": "26", "Longest Sequences (bp)": "466739", "N50 (bp)": "236076", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "2545", "Average Protein Length": "330.4", "Coding Ratio (%)": "88.6", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas jeotgali", "strain": "strain=Hwa", "accession": "GCA_000334215.1", "taxid": 553386, "species_taxid": 553386, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 935, "total_fragments": 936, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas subglaciescola", "strain": "strain=ACAM 12", "accession": "GCA_900142895.1", "taxid": 29571, "species_taxid": 29571, "relation_to_type": "type", "validated": true, "ani": 82.2186, "matched_fragments": 644, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 79.5118, "matched_fragments": 449, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 79.3588, "matched_fragments": 402, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 79.2717, "matched_fragments": 400, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 79.223, "matched_fragments": 424, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 79.1746, "matched_fragments": 410, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 79.1428, "matched_fragments": 425, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 79.0869, "matched_fragments": 374, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 79.0514, "matched_fragments": 419, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas johnsoniae", "strain": "strain=KCTC 22157", "accession": "GCA_014651795.1", "taxid": 502832, "species_taxid": 502832, "relation_to_type": "type", "validated": true, "ani": 78.4474, "matched_fragments": 331, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 78.3572, "matched_fragments": 315, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas taeanensis", "strain": "strain=BH539", "accession": "GCA_900100755.1", "taxid": 284577, "species_taxid": 284577, "relation_to_type": "type", "validated": true, "ani": 78.3284, "matched_fragments": 303, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" } ], 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