{ "type": "genome", "identifier": "GCF_000334455.1", "organism": "Gordonia soli NBRC 108243", "title": "Gordonia soli NBRC 108243", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000334455.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041810", "wgs_master": "BANX00000000.1", "refseq_category": "reference genome", "taxid": "1223545", "species_taxid": "320799", "organism_name": "Gordonia soli NBRC 108243", "infraspecific_name": "strain=NBRC 108243", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/01/25", "asm_name": "ASM33445v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000334455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/334/455/GCF_000334455.1_ASM33445v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5375815", "genome_size_ungapped": "5375815", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000334455.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4956", "protein_coding_gene_count": "4850", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-01-25", "dateModified": "2013-01-25", "datePublished": "2013-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia soli NBRC 108243" ], "sample_taxid": [ "1223545" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.463 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5375815", "Number of Sequences": "60", "Longest Sequences (bp)": "457185", "N50 (bp)": "167220", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "4918", "Average Protein Length": "322.0", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia soli", "strain": "strain=NBRC 108243", "accession": "GCA_000334455.1", "taxid": 320799, "species_taxid": 320799, 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79.9303, "matched_fragments": 762, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amicalis", "strain": "strain=NBRC 100051", "accession": "GCA_000332995.1", "taxid": 89053, "species_taxid": 89053, "relation_to_type": "type", "validated": true, "ani": 79.9131, "matched_fragments": 728, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amicalis", "strain": "strain=DSM 44461", "accession": "GCA_012395955.1", "taxid": 89053, "species_taxid": 89053, "relation_to_type": "type", "validated": true, "ani": 79.9097, "matched_fragments": 738, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia insulae", "strain": "strain=MMS17-SY073", "accession": "GCA_003855095.1", "taxid": 2420509, "species_taxid": 2420509, "relation_to_type": "type", "validated": true, "ani": 79.7932, "matched_fragments": 846, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=NBRC 100010", "accession": "GCA_001485495.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", "validated": true, "ani": 79.754, "matched_fragments": 739, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=3612", "accession": "GCA_001698225.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7225, "matched_fragments": 796, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_000716975.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7191, "matched_fragments": 800, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=213E", "accession": "GCA_010119475.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", "validated": true, "ani": 79.7069, "matched_fragments": 756, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NBRC 100016", "accession": "GCA_000248035.2", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6905, "matched_fragments": 797, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6724, "matched_fragments": 808, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 79.5702, "matched_fragments": 750, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", "accession": "GCA_000298195.1", "taxid": 83341, "species_taxid": 83341, "relation_to_type": "type", "validated": true, "ani": 79.4772, "matched_fragments": 719, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia shandongensis", "strain": "strain=DSM 45094", "accession": "GCA_000423025.1", "taxid": 376351, "species_taxid": 376351, "relation_to_type": "type", "validated": true, "ani": 78.6187, "matched_fragments": 437, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia spumicola", "strain": "strain=NBRC 107696", "accession": "GCA_009932475.1", "taxid": 589161, "species_taxid": 589161, "relation_to_type": "type", "validated": true, "ani": 78.6052, "matched_fragments": 533, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia phthalatica", "strain": "strain=QH-11", "accession": "GCA_001305675.1", "taxid": 1136941, "species_taxid": 1136941, "relation_to_type": "type", "validated": true, "ani": 78.5057, "matched_fragments": 545, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000334455.1", "gtdb_species": "s__Gordonia soli", "ani": 100.0, "matched_fragments": 1760, "total_fragments": 1762, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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