{ "type": "genome", "identifier": "GCF_000335475.2", "organism": "Cystobacter fuscus DSM 2262", "title": "Cystobacter fuscus DSM 2262", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IMTECH-CSIR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000335475.2", "bioproject": "PRJNA224116", "biosample": "SAMN02470006", "wgs_master": "ANAH00000000.2", "refseq_category": "reference genome", "taxid": "1242864", "species_taxid": "43", "organism_name": "Cystobacter fuscus DSM 2262", "infraspecific_name": "strain=DSM 2262", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/30", "asm_name": "ASM33547v2", "asm_submitter": "IMTECH-CSIR", "gbrs_paired_asm": "GCA_000335475.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/335/475/GCF_000335475.2_ASM33547v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12282374", "genome_size_ungapped": "12282374", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000335475.2-RS_2024_07_31", "annotation_date": "2024-07-31", "total_gene_count": "10094", "protein_coding_gene_count": "9917", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-30", "dateModified": "2013-07-30", "datePublished": "2013-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Cystobacter fuscus DSM 2262" ], "sample_taxid": [ "1242864" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "3.338 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.42, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12282374", "Number of Sequences": "76", "Longest Sequences (bp)": "1016131", "N50 (bp)": "457853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.6", "Number of CDSs": "10223", "Average Protein Length": "360.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "6", "Number of tRNAs": "65", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 83.7966, "matched_fragments": 2265, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 83.7421, "matched_fragments": 2253, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 83.6476, "matched_fragments": 2194, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 80.89, "matched_fragments": 1639, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 80.8054, "matched_fragments": 1646, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus fallax", "strain": "strain=DSM 14698", "accession": "GCA_012933655.1", "taxid": 394095, "species_taxid": 394095, "relation_to_type": "type", "validated": true, "ani": 80.1702, "matched_fragments": 1636, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 80.0119, "matched_fragments": 1442, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 79.9925, "matched_fragments": 1669, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 79.9302, "matched_fragments": 1662, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 79.9055, "matched_fragments": 1403, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=NBRC 100333", "accession": "GCA_007991095.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 79.7237, "matched_fragments": 1466, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus fulvus", "strain": "strain=DSM 16525", "accession": "GCA_900111765.1", "taxid": 33, "species_taxid": 33, "relation_to_type": "type", "validated": true, "ani": 79.7057, "matched_fragments": 1478, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Usitatibacter rugosus", "strain": "strain=0125_3", "accession": "GCA_013003965.1", "taxid": 2732067, "species_taxid": 2732067, "relation_to_type": "type", "validated": true, "ani": 75.2446, "matched_fragments": 177, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 75.1458, "matched_fragments": 431, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=DSM 1382", "accession": "GCA_000429285.1", "taxid": 879, "species_taxid": 879, "relation_to_type": "type", "validated": true, "ani": 75.0075, "matched_fragments": 96, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas pacifica", "strain": "strain=CGMCC 1.11030", "accession": "GCA_900113695.1", "taxid": 1114924, "species_taxid": 1114924, "relation_to_type": "type", "validated": true, "ani": 74.9797, "matched_fragments": 297, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inaquosa", "strain": "strain=LB39", "accession": "GCA_003857055.1", "taxid": 2203716, "species_taxid": 2203716, "relation_to_type": "type", "validated": true, "ani": 74.9134, "matched_fragments": 215, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 74.9099, "matched_fragments": 246, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora vinacea", "strain": "strain=DSM 101695", "accession": "GCA_015751785.1", "taxid": 709878, "species_taxid": 709878, "relation_to_type": "type", "validated": true, "ani": 74.8813, "matched_fragments": 248, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia catudaia", "strain": "", "accession": "GCA_001544755.2", "taxid": 1777136, "species_taxid": 1777136, "relation_to_type": "type", "validated": true, "ani": 74.8595, "matched_fragments": 151, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix espanaensis", "strain": "strain=type strain: DSM 44229", "accession": "GCA_000328705.1", "taxid": 103731, "species_taxid": 103731, "relation_to_type": "type", "validated": true, "ani": 74.8579, "matched_fragments": 380, "total_fragments": 4060, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 10.42, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000335475.2", "gtdb_species": "s__Cystobacter fuscus", "ani": 100.0, "matched_fragments": 4060, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Cystobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002305875.1", "gtdb_species": "s__Cystobacter fuscus_A", "ani": 94.4042, "matched_fragments": 3334, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Cystobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001887355.1", "gtdb_species": "s__Cystobacter ferrugineus", "ani": 93.4156, "matched_fragments": 3185, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Cystobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002305855.1", "gtdb_species": "s__Melittangium boletus", "ani": 85.1527, "matched_fragments": 2323, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Melittangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016904885.1", "gtdb_species": "s__Melittangium primigenium", "ani": 84.5908, "matched_fragments": 2148, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Melittangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016859125.1", "gtdb_species": "s__Archangium violaceum_A", "ani": 84.2838, "matched_fragments": 2413, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Archangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016887565.1", "gtdb_species": "s__Archangium violaceum_B", "ani": 84.0453, "matched_fragments": 2435, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Archangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001027285.1", "gtdb_species": "s__Archangium gephyra", "ani": 83.7216, "matched_fragments": 2260, "total_fragments": 4060, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Archangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.698, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 12353562.4, "gc_content": 68.55, "coding_genes": 9722.5, "rRNA16S_genes": 4.0, "tRNA_genes": 60.0, "gram_stain": 0.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Cystobacter", "fuscus", "DSM", "2262" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }