{ "type": "genome", "identifier": "GCF_000336755.1", "organism": "Haloferax elongans ATCC BAA-1513", "title": "Haloferax elongans ATCC BAA-1513", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of California, Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000336755.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471641", "wgs_master": "AOLK00000000.1", "refseq_category": "reference genome", "taxid": "1230453", "species_taxid": "403191", "organism_name": "Haloferax elongans ATCC BAA-1513", "infraspecific_name": "strain=ATCC BAA-1513", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/04", "asm_name": "ASM33675v1", "asm_submitter": "University of California, Davis", "gbrs_paired_asm": "GCA_000336755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/336/755/GCF_000336755.1_ASM33675v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3952136", "genome_size_ungapped": "3952136", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000336755.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "3974", "protein_coding_gene_count": "3851", "non_coding_gene_count": "62", "pubmed_id": "25393412" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-04", "dateModified": "2013-02-04", "datePublished": "2013-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloferax elongans ATCC BAA-1513" ], "sample_taxid": [ "1230453" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.099 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3952136", "Number of Sequences": "27", "Longest Sequences (bp)": "667521", "N50 (bp)": "341465", "Gap Ratio (%)": "0.001341", "GCcontent (%)": "61.2", "Number of CDSs": "3892", "Average Protein Length": "291.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloferax elongans", "strain": "strain=ATCC BAA-1513", "accession": "GCA_000336755.1", "taxid": 403191, "species_taxid": 403191, "relation_to_type": 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