{
    "type": "genome",
    "identifier": "GCF_000337055.1",
    "organism": "Halorubrum distributum JCM 9100",
    "title": "Halorubrum distributum JCM 9100",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000337055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471665",
        "wgs_master": "AOJM00000000.1",
        "refseq_category": "na",
        "taxid": "1227467",
        "species_taxid": "29283",
        "organism_name": "Halorubrum distributum JCM 9100",
        "infraspecific_name": "strain=JCM 9100",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/02/04",
        "asm_name": "ASM33705v1",
        "asm_submitter": "University of California, Davis",
        "gbrs_paired_asm": "GCA_000337055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/055/GCF_000337055.1_ASM33705v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3307369",
        "genome_size_ungapped": "3307369",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "83",
        "contig_count": "83",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000337055.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3315",
        "protein_coding_gene_count": "3164",
        "non_coding_gene_count": "66",
        "pubmed_id": "25393412"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-02-04",
    "dateModified": "2013-02-04",
    "datePublished": "2013-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorubrum distributum JCM 9100"
        ],
        "sample_taxid": [
            "1227467"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.893 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3307369",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "166369",
        "N50 (bp)": "71130",
        "Gap Ratio (%)": "0.004203",
        "GCcontent (%)": "68.1",
        "Number of CDSs": "3246",
        "Average Protein Length": "288.6",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halorubrum distributum",
                "strain": "strain=JCM 9100",
                "accession": "GCA_000337055.1",
                "taxid": 29283,
                "species_taxid": 29283,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1059,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halorubrum distributum",
                "strain": "strain=JCM 10118",
                "accession": "GCA_000337335.1",
                "taxid": 29283,
                "species_taxid": 29283,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9538,
                "matched_fragments": 1051,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halorubrum arcis",
                "strain": "strain=JCM 13916",
                "accession": "GCA_000337015.1",
                "taxid": 368454,
                "species_taxid": 368454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.7005,
                "matched_fragments": 884,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Halorubrum ezzemoulense",
                "strain": "strain=DSM 17463",
                "accession": "GCA_002114285.1",
                "taxid": 337243,
                "species_taxid": 337243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0404,
                "matched_fragments": 806,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum ezzemoulense",
                "strain": "strain=DSM 17463",
                "accession": "GCA_000421805.1",
                "taxid": 337243,
                "species_taxid": 337243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0376,
                "matched_fragments": 830,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum coriense",
                "strain": "strain=DSM 10284",
                "accession": "GCA_000337035.1",
                "taxid": 64713,
                "species_taxid": 64713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6204,
                "matched_fragments": 786,
                "total_fragments": 1065,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000337335.1",
                "gtdb_species": "s__Halorubrum distributum",
                "ani": 99.9538,
                "matched_fragments": 1051,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018228765.1",
                "gtdb_species": "s__Halorubrum sp000296615",
                "ani": 93.384,
                "matched_fragments": 847,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003666015.1",
                "gtdb_species": "s__Halorubrum sp003666015",
                "ani": 93.1481,
                "matched_fragments": 860,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002355655.1",
                "gtdb_species": "s__Halorubrum trapanicum_A",
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                "matched_fragments": 838,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000336875.1",
                "gtdb_species": "s__Halorubrum californiense",
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                "matched_fragments": 807,
                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017873555.1",
                "gtdb_species": "s__Halorubrum trapanicum",
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                "matched_fragments": 773,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005435165.1",
                "gtdb_species": "s__Halorubrum sp005435165",
                "ani": 90.3815,
                "matched_fragments": 827,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337075.1",
                "gtdb_species": "s__Halorubrum hochstenium",
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                "total_fragments": 1065,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.2282,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.397,
        "doubling_h": 0.945,
        "growth_tmp": 34.0,
        "optimum_tmp": 38.687,
        "optimum_ph": 7.755,
        "genome_size": 2955715.667,
        "gc_content": 66.35,
        "coding_genes": 3172.833,
        "rRNA16S_genes": 2.5,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.857,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halorubrum",
        "distributum",
        "JCM",
        "9100"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}