{
    "type": "genome",
    "identifier": "GCF_000337155.1",
    "organism": "Natrinema altunense JCM 12890",
    "title": "Natrinema altunense JCM 12890",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000337155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471672",
        "wgs_master": "AOIK00000000.1",
        "refseq_category": "na",
        "taxid": "1227494",
        "species_taxid": "222984",
        "organism_name": "Natrinema altunense JCM 12890",
        "infraspecific_name": "strain=JCM 12890",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/02/04",
        "asm_name": "ASM33715v1",
        "asm_submitter": "University of California, Davis",
        "gbrs_paired_asm": "GCA_000337155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/155/GCF_000337155.1_ASM33715v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3774970",
        "genome_size_ungapped": "3774970",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "52",
        "contig_count": "52",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000337155.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3840",
        "protein_coding_gene_count": "3675",
        "non_coding_gene_count": "63",
        "pubmed_id": "25393412"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-02-04",
    "dateModified": "2013-02-04",
    "datePublished": "2013-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natrinema altunense JCM 12890"
        ],
        "sample_taxid": [
            "1227494"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.039 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3774970",
        "Number of Sequences": "52",
        "Longest Sequences (bp)": "534301",
        "N50 (bp)": "184807",
        "Gap Ratio (%)": "0.002728",
        "GCcontent (%)": "64.5",
        "Number of CDSs": "3698",
        "Average Protein Length": "282.4",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natrinema altunense",
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                "accession": "GCA_000337155.1",
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                "species_taxid": 222984,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1234,
                "total_fragments": 1235,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrinema altunense",
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                "species_taxid": 222984,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1226,
                "total_fragments": 1235,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrinema pallidum",
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                "species_taxid": 69527,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema gari",
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                "accession": "GCA_000337175.1",
                "taxid": 419186,
                "species_taxid": 419186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2151,
                "matched_fragments": 1035,
                "total_fragments": 1235,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema amylolyticum",
                "strain": "strain=LT61",
                "accession": "GCA_020515625.1",
                "taxid": 2878679,
                "species_taxid": 2878679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4227,
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                "total_fragments": 1235,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum sulfidifaciens",
                "strain": "strain=JCM 14089",
                "accession": "GCA_000337735.1",
                "taxid": 388259,
                "species_taxid": 388259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6036,
                "matched_fragments": 609,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000731985.1",
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                "total_fragments": 1235,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 4,
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            {
                "accession": "GCF_000337615.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.94",
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                "num_clustered_genomes": 2,
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            },
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
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                "accession": "GCF_002494345.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.42",
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            },
            {
                "accession": "GCF_005576615.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCF_013342135.1",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 1.0,
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    },
    "_genome_taxon": [
        "Natrinema",
        "altunense",
        "JCM",
        "12890"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}