{ "type": "genome", "identifier": "GCF_000337515.1", "organism": "Halovivax asiaticus JCM 14624", "title": "Halovivax asiaticus JCM 14624", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of California, Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000337515.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471651", "wgs_master": "AOIQ00000000.1", "refseq_category": "reference genome", "taxid": "1227490", "species_taxid": "332953", "organism_name": "Halovivax asiaticus JCM 14624", "infraspecific_name": "strain=JCM 14624", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/04", "asm_name": "ASM33751v1", "asm_submitter": "University of California, Davis", "gbrs_paired_asm": "GCA_000337515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/515/GCF_000337515.1_ASM33751v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3238452", "genome_size_ungapped": "3238452", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000337515.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "3237", "protein_coding_gene_count": "3143", "non_coding_gene_count": "50", "pubmed_id": "25393412" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-04", "dateModified": "2013-02-04", "datePublished": "2013-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Halovivax asiaticus JCM 14624" ], "sample_taxid": [ "1227490" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3238452", "Number of Sequences": "24", "Longest Sequences (bp)": "554458", "N50 (bp)": "327817", "Gap Ratio (%)": "0.000865", "GCcontent (%)": "64.5", "Number of CDSs": "3127", "Average Protein Length": "291.8", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halovivax asiaticus", "strain": "strain=JCM 14624", "accession": "GCA_000337515.1", "taxid": 332953, "species_taxid": 332953, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1068, "total_fragments": 1068, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halovivax ruber", "strain": "strain=XH-70", "accession": "GCA_000328525.1", "taxid": 387341, "species_taxid": 387341, "relation_to_type": "type", "validated": true, "ani": 93.2822, "matched_fragments": 887, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovivax cerinus", "strain": "strain=IBRC-M 10256", "accession": "GCA_024498195.1", "taxid": 1487865, "species_taxid": 1487865, "relation_to_type": "type", "validated": true, "ani": 84.02, "matched_fragments": 778, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovivax limisalsi", "strain": "strain=IBRC-M 10022", "accession": "GCA_023093535.1", "taxid": 1453760, "species_taxid": 1453760, "relation_to_type": "type", "validated": true, "ani": 81.2586, "matched_fragments": 659, 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"spiral_cell_shape": null }, "_genome_taxon": [ "Halovivax", "asiaticus", "JCM", "14624" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }