{
    "type": "genome",
    "identifier": "GCF_000337615.1",
    "organism": "Natrinema pallidum DSM 3751",
    "title": "Natrinema pallidum DSM 3751",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000337615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471671",
        "wgs_master": "AOII00000000.1",
        "refseq_category": "na",
        "taxid": "1227495",
        "species_taxid": "69527",
        "organism_name": "Natrinema pallidum DSM 3751",
        "infraspecific_name": "strain=DSM 3751",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/02/04",
        "asm_name": "ASM33761v1",
        "asm_submitter": "University of California, Davis",
        "gbrs_paired_asm": "GCA_000337615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/615/GCF_000337615.1_ASM33761v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3915814",
        "genome_size_ungapped": "3915814",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "115",
        "contig_count": "115",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000337615.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3983",
        "protein_coding_gene_count": "3725",
        "non_coding_gene_count": "62",
        "pubmed_id": "25393412"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-02-04",
    "dateModified": "2013-02-04",
    "datePublished": "2013-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natrinema pallidum DSM 3751"
        ],
        "sample_taxid": [
            "1227495"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.085 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3915814",
        "Number of Sequences": "115",
        "Longest Sequences (bp)": "242669",
        "N50 (bp)": "88603",
        "Gap Ratio (%)": "0.005695",
        "GCcontent (%)": "63.7",
        "Number of CDSs": "3823",
        "Average Protein Length": "278.6",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natrinema pallidum",
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                "accession": "GCA_000337615.1",
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                "species_taxid": 69527,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1247,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrinema altunense",
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                "species_taxid": 222984,
                "relation_to_type": "type",
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                "total_fragments": 1252,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema altunense",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema gari",
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                "taxid": 419186,
                "species_taxid": 419186,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema amylolyticum",
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                "accession": "GCA_020515625.1",
                "taxid": 2878679,
                "species_taxid": 2878679,
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                "ani": 87.0623,
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                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema versiforme",
                "strain": "strain=JCM 10478",
                "accession": "GCA_000337195.1",
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                "species_taxid": 88724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8393,
                "matched_fragments": 841,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema salaciae",
                "strain": "strain=DSM 25055",
                "accession": "GCA_900110865.1",
                "taxid": 1186196,
                "species_taxid": 1186196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.423,
                "matched_fragments": 894,
                "total_fragments": 1252,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000337615.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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                "min_intra_species_ani": "98.94",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_000731985.1",
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                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 4,
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            },
            {
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_005576615.1",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_002494345.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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            },
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            },
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
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        "doubling_h": 0.271,
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        "gc_content": 63.96,
        "coding_genes": 4112.0,
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        "range_salinity": null,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Natrinema",
        "pallidum",
        "DSM",
        "3751"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}