{
    "type": "genome",
    "identifier": "GCF_000337815.1",
    "organism": "Haloferax mucosum ATCC BAA-1512",
    "title": "Haloferax mucosum ATCC BAA-1512",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000337815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471642",
        "wgs_master": "AOLN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "662479",
        "species_taxid": "403181",
        "organism_name": "Haloferax mucosum ATCC BAA-1512",
        "infraspecific_name": "strain=ATCC BAA-1512",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/02/04",
        "asm_name": "ASM33781v1",
        "asm_submitter": "University of California, Davis",
        "gbrs_paired_asm": "GCA_000337815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/815/GCF_000337815.1_ASM33781v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3368982",
        "genome_size_ungapped": "3368982",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000337815.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3477",
        "protein_coding_gene_count": "3386",
        "non_coding_gene_count": "60",
        "pubmed_id": "25393412"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-02-04",
    "dateModified": "2013-02-04",
    "datePublished": "2013-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haloferax mucosum ATCC BAA-1512"
        ],
        "sample_taxid": [
            "662479"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.931 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3368982",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "788535",
        "N50 (bp)": "364210",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.8",
        "Number of CDSs": "3373",
        "Average Protein Length": "283.6",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "11"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Haloferax mucosum",
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                "accession": "GCA_000337815.1",
                "taxid": 403181,
                "species_taxid": 403181,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1113,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haloferax mediterranei",
                "strain": "strain=CGMCC 1.2087",
                "accession": "GCA_000306765.2",
                "taxid": 2252,
                "species_taxid": 2252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1686,
                "matched_fragments": 899,
                "total_fragments": 1114,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax mediterranei",
                "strain": "strain=ATCC 33500",
                "accession": "GCA_000337295.1",
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                "species_taxid": 2252,
                "relation_to_type": "type",
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                "total_fragments": 1114,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax mediterranei",
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                "accession": "GCA_005406325.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax mediterranei",
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                "accession": "GCA_000685635.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1109,
                "matched_fragments": 911,
                "total_fragments": 1114,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferax marisrubri",
                "strain": "strain=SB3",
                "accession": "GCA_001469875.2",
                "taxid": 1544719,
                "species_taxid": 1544719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4266,
                "matched_fragments": 802,
                "total_fragments": 1114,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000337815.1",
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                "matched_fragments": 1113,
                "total_fragments": 1114,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_000306765.2",
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                "total_fragments": 1114,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000337835.1",
                "gtdb_species": "s__Haloferax sulfurifontis",
                "ani": 84.5806,
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                "total_fragments": 1114,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "min_intra_species_ani": "99.04",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001469875.2",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.85",
                "min_intra_species_ani": "95.85",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001368915.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
                "ani_circumscription_radius": 95.2845,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "96.94",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
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            },
            {
                "accession": "GCF_001482285.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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            },
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                "accession": "GCF_000336755.1",
                "gtdb_species": "s__Haloferax elongans",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009674585.1",
                "gtdb_species": "s__Haloferax sp009674585",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Haloferax",
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                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.179,
        "cell_length": 0.336,
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        "growth_tmp": 40.0,
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        "genome_size": 3371699.0,
        "gc_content": 62.184,
        "coding_genes": 3795.444,
        "rRNA16S_genes": 2.333,
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        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.333,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Haloferax",
        "mucosum",
        "ATCC",
        "BAA-1512"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}