{ "type": "genome", "identifier": "GCF_000337875.1", "organism": "Natrialba magadii ATCC 43099", "title": "Natrialba magadii ATCC 43099", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of California, Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000337875.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471679", "wgs_master": "AOHS00000000.1", "refseq_category": "na", "taxid": "547559", "species_taxid": "13769", "organism_name": "Natrialba magadii ATCC 43099", "infraspecific_name": "strain=MS-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/04", "asm_name": "ASM33787v1", "asm_submitter": "University of California, Davis", "gbrs_paired_asm": "GCA_000337875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/337/875/GCF_000337875.1_ASM33787v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4416299", "genome_size_ungapped": "4416299", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000337875.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "4278", "protein_coding_gene_count": "4109", "non_coding_gene_count": "55", "pubmed_id": "25393412" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-04", "dateModified": "2013-02-04", "datePublished": "2013-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Natrialba magadii ATCC 43099" ], "sample_taxid": [ "547559" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4416299", "Number of Sequences": "66", "Longest Sequences (bp)": "269514", "N50 (bp)": "127312", "Gap Ratio (%)": "0.002491", "GCcontent (%)": "61.1", "Number of CDSs": "4197", "Average Protein Length": "289.4", "Coding Ratio (%)": "82.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natrialba magadii", "strain": "strain=MS-3", "accession": "GCA_000337875.1", "taxid": 13769, "species_taxid": 13769, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1438, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Natrialba magadii", "strain": "strain=ATCC 43099", "accession": "GCA_000025625.1", "taxid": 13769, "species_taxid": 13769, "relation_to_type": "type", "validated": true, "ani": 99.9854, "matched_fragments": 1434, "total_fragments": 1438, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Natrialba hulunbeirensis", "strain": "strain=JCM 10989", "accession": "GCA_000337575.1", "taxid": 123783, "species_taxid": 123783, "relation_to_type": "type", "validated": true, "ani": 89.9764, "matched_fragments": 1112, "total_fragments": 1438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrialba chahannaoensis", "strain": "strain=JCM 10990", "accession": "GCA_000337135.1", "taxid": 68911, "species_taxid": 68911, "relation_to_type": "type", "validated": true, "ani": 89.1734, "matched_fragments": 1057, "total_fragments": 1438, "ani_threshold": 95, "status": "below_threshold" }, { 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Natrialba", "magadii", "ATCC", "43099" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }