{
    "type": "genome",
    "identifier": "GCF_000339035.1",
    "organism": "Mycoplasma mycoides subsp. capri PG3",
    "title": "Mycoplasma mycoides subsp. capri PG3",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Inner Mongolia agricultural university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000339035.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02469926",
        "wgs_master": "ANIV00000000.1",
        "refseq_category": "na",
        "taxid": "1188246",
        "species_taxid": "2102",
        "organism_name": "Mycoplasma mycoides subsp. capri PG3",
        "infraspecific_name": "strain=PG3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/02/19",
        "asm_name": "ASM33903v1",
        "asm_submitter": "Inner Mongolia agricultural university",
        "gbrs_paired_asm": "GCA_000339035.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/339/035/GCF_000339035.1_ASM33903v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1025098",
        "genome_size_ungapped": "1023884",
        "gc_percent": "23.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-26",
        "total_gene_count": "863",
        "protein_coding_gene_count": "816",
        "non_coding_gene_count": "34",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-02-19",
    "dateModified": "2013-02-19",
    "datePublished": "2013-02-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycoplasma mycoides subsp. capri PG3"
        ],
        "sample_taxid": [
            "1188246"
        ],
        "sample_host_organism": [
            "goat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Turkey"
        ],
        "sample_host_location_id": [],
        "data_size": "0.267 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1025098",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "644622",
        "N50 (bp)": "644622",
        "Gap Ratio (%)": "0.118428",
        "GCcontent (%)": "23.6",
        "Number of CDSs": "1499",
        "Average Protein Length": "137.6",
        "Coding Ratio (%)": "60.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mycoplasma mycoides subsp. capri",
                "strain": "strain=PG3",
                "accession": "GCA_000339035.1",
                "taxid": 40477,
                "species_taxid": 2102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 336,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycoplasma mycoides subsp. capri",
                "strain": "strain=PG3",
                "accession": "GCA_000590435.1",
                "taxid": 40477,
                "species_taxid": 2102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9261,
                "matched_fragments": 323,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mycoplasma mycoides subsp. mycoides",
                "strain": "strain=PG1",
                "accession": "GCA_000011445.1",
                "taxid": 2103,
                "species_taxid": 2102,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8785,
                "matched_fragments": 293,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasma leachii",
                "strain": "strain=PG50",
                "accession": "GCA_000183365.1",
                "taxid": 2105,
                "species_taxid": 2105,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.6708,
                "matched_fragments": 291,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasma capricolum subsp. capricolum",
                "strain": "strain=ATCC 27343",
                "accession": "GCA_000012765.1",
                "taxid": 40479,
                "species_taxid": 2095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3618,
                "matched_fragments": 280,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasma capricolum subsp. capripneumoniae",
                "strain": "strain=type strain: F38 = NCTC 10192",
                "accession": "GCA_000953375.1",
                "taxid": 40480,
                "species_taxid": 2095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2375,
                "matched_fragments": 276,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasma feriruminatoris",
                "strain": "strain=G5847",
                "accession": "GCA_000327395.2",
                "taxid": 1179777,
                "species_taxid": 1179777,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9617,
                "matched_fragments": 289,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasma cottewii",
                "strain": "strain=VIS",
                "accession": "GCA_024918975.1",
                "taxid": 51364,
                "species_taxid": 51364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0877,
                "matched_fragments": 165,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiroplasma floricola",
                "strain": "strain=23-6",
                "accession": "GCA_002813555.1",
                "taxid": 216937,
                "species_taxid": 216937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.127,
                "matched_fragments": 77,
                "total_fragments": 337,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900489555.1",
                "gtdb_species": "s__Mycoplasma capri",
                "ani": 97.2957,
                "matched_fragments": 299,
                "total_fragments": 337,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma",
                "ani_circumscription_radius": 95.6652,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "97.30",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000011445.1",
                "gtdb_species": "s__Mycoplasma mycoides",
                "ani": 94.8342,
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                "total_fragments": 337,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma",
                "ani_circumscription_radius": 95.6652,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_000183365.1",
                "gtdb_species": "s__Mycoplasma leachii",
                "ani": 91.73,
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                "total_fragments": 337,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000012765.1",
                "gtdb_species": "s__Mycoplasma capricolum",
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                "matched_fragments": 280,
                "total_fragments": 337,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.30",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCF_000327395.1",
                "gtdb_species": "s__Mycoplasma feriruminatoris",
                "ani": 89.2816,
                "matched_fragments": 273,
                "total_fragments": 337,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.618,
        "cell_length": -0.458,
        "doubling_h": 0.566,
        "growth_tmp": 36.578,
        "optimum_tmp": 35.987,
        "optimum_ph": 7.6,
        "genome_size": 851576.622,
        "gc_content": 28.861,
        "coding_genes": 692.076,
        "rRNA16S_genes": 1.563,
        "tRNA_genes": 31.44,
        "gram_stain": 0.009,
        "sporulation": 0.0,
        "motility": 0.156,
        "range_salinity": 0.09,
        "facultative_respiration": 0.622,
        "anaerobic_respiration": 0.044,
        "aerobic_respiration": 0.333,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.023,
        "coccus_cell_shape": 0.93,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.046,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mycoplasma",
        "mycoides",
        "subsp.",
        "capri",
        "PG3"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}