{
    "type": "genome",
    "identifier": "GCF_000340415.1",
    "organism": "Amycolatopsis azurea DSM 43854",
    "title": "Amycolatopsis azurea DSM 43854",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "IMTECH",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000340415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN01939083",
        "wgs_master": "ANMG00000000.1",
        "refseq_category": "na",
        "taxid": "1238180",
        "species_taxid": "36819",
        "organism_name": "Amycolatopsis azurea DSM 43854",
        "infraspecific_name": "strain=DSM 43854",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/02/12",
        "asm_name": "Amycolatopsis azurea",
        "asm_submitter": "IMTECH",
        "gbrs_paired_asm": "GCA_000340415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/415/GCF_000340415.1_Amycolatopsis_azurea",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9223451",
        "genome_size_ungapped": "9223451",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "154",
        "contig_count": "154",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000340415.1-RS_2024_04_28",
        "annotation_date": "2024-04-28",
        "total_gene_count": "8665",
        "protein_coding_gene_count": "8497",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-02-12",
    "dateModified": "2013-02-12",
    "datePublished": "2013-02-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Amycolatopsis azurea DSM 43854"
        ],
        "sample_taxid": [
            "1238180"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "2.506 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9223451",
        "Number of Sequences": "154",
        "Longest Sequences (bp)": "337387",
        "N50 (bp)": "127182",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "8683",
        "Average Protein Length": "318.8",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Amycolatopsis azurea",
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                "species_taxid": 36819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2995,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Amycolatopsis azurea",
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                "species_taxid": 36819,
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                "ani": 99.9953,
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                "status": "conclusive"
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "accession": "GCA_000384215.1",
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                "species_taxid": 76020,
                "relation_to_type": "type",
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                "matched_fragments": 2477,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Amycolatopsis alba",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis umgeniensis",
                "strain": "strain=DSM 45272",
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                "species_taxid": 336628,
                "relation_to_type": "type",
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                "ani": 91.5966,
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                "status": "below_threshold"
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            {
                "organism_name": "Amycolatopsis japonica",
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                "relation_to_type": "type",
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                "ani": 91.3098,
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                "ani_threshold": 95,
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            },
            {
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            {
                "organism_name": "Amycolatopsis keratiniphila subsp. keratiniphila",
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                "ani": 91.0797,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Amycolatopsis camponoti",
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            },
            {
                "organism_name": "Amycolatopsis thermalba",
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                "relation_to_type": "type",
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                "ani": 79.9975,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prauserella cavernicola",
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            },
            {
                "organism_name": "Amycolatopsis aidingensis",
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                "accession": "GCA_018885265.1",
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                "ani_threshold": 95,
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            {
                "organism_name": "Actinokineospora globicatena",
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}