# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_15	LOCUS_00150	sequence1:18676..19170(+)	partial			WP_003420504.1	helix-turn-helix domain-containing protein	61.6	78.5	37.3
MGA_18	LOCUS_00180	sequence1:20343..20942(+)	frameshift		20928,20502	WP_012259053.1	DNA-processing protein DprA	79.9	42.4	31.4
MGA_32	LOCUS_00320	sequence1:33297..34961(-)	partial			WP_010907473.1	DUF3662 and FHA domain-containing protein	49.3	54.1	69.2
MGA_58	LOCUS_00580	sequence1:61847..62350(-)	internal_stop_codon	62393..62395(-)		WP_003400476.1	MarR family transcriptional regulator	100.0	80.3	86.2
MGA_83	LOCUS_00830	sequence1:86325..86882(-)	frameshift		86327	WP_003404747.1	PPE family protein	96.2	42.1	43.0
MGA_88	LOCUS_00880	sequence1:91282..91581(+)	partial			WP_010950878.1	PE family protein	98.0	15.5	39.2
MGA_89	LOCUS_00890	sequence1:91887..92450(+)	partial			WP_003409061.1	PPE family protein	96.3	38.7	40.0
MGA_98	LOCUS_00980	sequence1:102996..103469(-)	partial			WP_188683277.1	IS5 family transposase	83.4	41.7	45.8
MGA_106	LOCUS_01060	sequence1:112687..112959(+)	partial			WP_011729905.1	GNAT family N-acetyltransferase	65.6	14.5	64.4
MGA_110	LOCUS_01100	sequence1:116640..116888(-)	partial			WP_013228662.1	heavy metal translocating P-type ATPase	86.6	10.2	71.8
MGA_111	LOCUS_01110	sequence1:116879..117184(-)	partial			WP_013225368.1	heavy metal translocating P-type ATPase	90.1	11.3	57.1
MGA_113	LOCUS_01130	sequence1:117705..118214(+)	partial			WP_003400664.1	SRPBCC family protein	92.9	70.1	84.7
MGA_115	LOCUS_01150	sequence1:119705..119971(-)	frameshift		119716	WP_005085604.1	SDR family oxidoreductase	67.0	22.7	58.1
MGA_116	LOCUS_01160	sequence1:120015..120158(-)	frameshift,internal_stop_codon	120264..120266(-)	120020	WP_003857953.1	sodium/hydrogen exchanger	95.7	11.0	57.8
MGA_117	LOCUS_01170	sequence1:120264..120842(-)	frameshift,internal_stop_codon	120264..120266(-)	120020	WP_005082601.1	sodium/hydrogen exchanger	85.4	39.3	57.3
MGA_137	LOCUS_01370	sequence1:138302..139885(+)	partial			WP_013227752.1	AMP-binding protein	96.2	74.6	38.7
MGA_140	LOCUS_01400	sequence1:146129..146521(+)	partial			WP_011141228.1	SDR family oxidoreductase	86.2	44.6	42.0
MGA_145	LOCUS_01450	sequence1:153236..153595(-)	partial			WP_005113228.1	NADP-dependent oxidoreductase	93.3	36.7	49.6
MGA_182	LOCUS_01820	sequence1:191226..191861(+)	partial			WP_003400961.1	TetR/AcrR family transcriptional regulator	99.1	74.6	65.1
MGA_188	LOCUS_01880	sequence1:197763..198353(+)	partial			WP_003404747.1	PPE family protein	98.0	48.2	38.5
MGA_205	LOCUS_02050	sequence1:212315..212557(+)	partial			WP_011728746.1	thioesterase family protein	80.0	21.4	68.8
MGA_206	LOCUS_02060	sequence1:213214..213714(-)	partial			WP_011027196.1	CAP domain-containing protein	87.3	52.1	34.8
MGA_225	LOCUS_02250	sequence1:232416..232544(+)	partial			WP_010908099.1	WXG100 family type VII secretion target	100.0	43.0	62.8
MGA_239	LOCUS_02390	sequence1:247966..248961(+)	partial			WP_003908487.1	Ig-like domain-containing protein	78.9	74.1	82.8
MGA_260	LOCUS_02600	sequence1:275897..276298(-)	partial			WP_013228395.1	CD225/dispanin family protein	60.2	62.0	50.0
MGA_265	LOCUS_02650	sequence1:280730..281293(-)	frameshift		281436	WP_003412375.1	enhanced intracellular survival protein Eis	100.0	45.6	62.1
MGA_266	LOCUS_02660	sequence1:281513..282136(-)	frameshift		281650,281436	WP_003412375.1	enhanced intracellular survival protein Eis	41.5	22.1	48.9
MGA_273	LOCUS_02730	sequence1:286332..286640(-)	partial			WP_003901009.1	PE family protein	99.0	57.7	55.4
MGA_275	LOCUS_02750	sequence1:288077..291121(+)	partial			WP_003416064.1	serine/threonine protein kinase PknK	28.8	26.4	57.0
MGA_289	LOCUS_02890	sequence1:305638..306231(-)	partial			WP_003409061.1	PPE family protein	97.0	41.3	35.1
MGA_295	LOCUS_02950	sequence1:310229..310777(+)	frameshift		310853	WP_011021953.1	acetolactate synthase large subunit	87.4	32.6	51.3
MGA_298	LOCUS_02980	sequence1:312765..313250(-)	partial			WP_003912534.1	NADP-dependent succinic semialdehyde dehydrogenase	67.7	23.9	89.0
MGA_308	LOCUS_03080	sequence1:325367..325831(-)	partial			WP_226990856.1	HAD family hydrolase	72.1	82.4	27.4
MGA_325	LOCUS_03250	sequence1:345259..345516(-)	frameshift		345645,345525	WP_010908953.1	biotin-dependent carboxyltransferase family protein	80.0	27.9	71.8
MGA_326	LOCUS_03260	sequence1:345607..345789(-)	frameshift		345645,345525	WP_010908953.1	biotin-dependent carboxyltransferase family protein	88.3	17.4	81.1
MGA_334	LOCUS_03340	sequence1:353530..353895(-)	partial			WP_003401397.1	TetR family transcriptional regulator	86.0	50.5	73.1
MGA_342	LOCUS_03420	sequence1:358763..360355(+)	partial			WP_003401347.1	PPE family protein	35.3	33.8	59.6
MGA_366	LOCUS_03660	sequence1:386034..387440(+)	partial			WP_011727115.1	hypothetical protein	73.1	60.5	36.9
MGA_369	LOCUS_03690	sequence1:388626..388943(+)	internal_stop_codon	389008..389010(+)		WP_005766899.1	NADP-dependent oxidoreductase	74.3	23.3	47.4
MGA_370	LOCUS_03700	sequence1:389074..389403(+)	internal_stop_codon	389008..389010(+)		WP_003097826.1	NADP-dependent oxidoreductase	93.6	30.8	41.7
MGA_383	LOCUS_03830	sequence1:402884..403519(+)	partial			WP_011030806.1	TetR family transcriptional regulator C-terminal domain-containing protein	84.4	63.5	41.4
MGA_388	LOCUS_03880	sequence1:407255..408439(+)	partial			WP_011727115.1	hypothetical protein	85.3	60.9	41.8
MGA_389	LOCUS_03890	sequence1:408573..409919(+)	partial			WP_011727115.1	hypothetical protein	75.7	58.9	44.6
MGA_400	LOCUS_04000	sequence1:420989..421420(-)	frameshift,internal_stop_codon	420862..420864(-),421348..421350(-),421303..421305(-)	421209,421029	WP_003899673.1	hypothetical protein	42.7	36.1	60.7
MGA_406	LOCUS_04060	sequence1:424505..426568(-)	partial			WP_010886177.1	PE family protein	19.9	23.1	67.9
MGA_451	LOCUS_04510	sequence1:470129..470941(+)	internal_stop_codon	470939..470941(+)		WP_082607665.1	cytochrome P450	100.0	57.4	62.2
MGA_454	LOCUS_04540	sequence1:473546..473689(-)	partial			WP_003898432.1	serine hydrolase domain-containing protein	70.2	8.1	75.8
MGA_462	LOCUS_04620	sequence1:481219..481662(+)	frameshift		481088	WP_011727189.1	hypothetical protein	91.2	46.4	67.2
MGA_472	LOCUS_04720	sequence1:490764..491276(-)	partial			WP_005088797.1	hypothetical protein	87.6	50.8	29.4
MGA_473	LOCUS_04730	sequence1:491703..492029(+)	partial			WP_013228394.1	CD225/dispanin family protein	73.1	68.7	43.0
MGA_475	LOCUS_04750	sequence1:492228..492470(+)	partial			WP_013228393.1	DUF2752 domain-containing protein	100.0	53.0	61.2
MGA_479	LOCUS_04790	sequence1:497227..497523(-)	partial			WP_011027912.1	YchJ family protein	91.8	69.4	54.4
MGA_485	LOCUS_04850	sequence1:502972..503181(+)	partial			WP_107661203.1	hypothetical protein	44.9	7.7	80.6
MGA_496	LOCUS_04960	sequence1:514146..514478(+)	partial			WP_003402203.1	LON peptidase substrate-binding domain-containing protein	77.3	38.7	74.1
MGA_514	LOCUS_05140	sequence1:533080..533496(-)	partial			WP_011727265.1	amidohydrolase family protein	97.8	23.3	83.0
MGA_515	LOCUS_05150	sequence1:533405..533821(-)	frameshift		533825	WP_011727265.1	amidohydrolase family protein	62.3	17.8	63.1
MGA_522	LOCUS_05220	sequence1:537679..538041(-)	partial			WP_003402248.1	DUF1295 domain-containing protein	94.2	44.1	86.7
MGA_524	LOCUS_05240	sequence1:539459..539752(-)	frameshift		539774	WP_003402248.1	DUF1295 domain-containing protein	83.5	31.6	80.2
MGA_525	LOCUS_05250	sequence1:540029..540322(-)	frameshift,internal_stop_codon	540029..540031(-)	540552,540359	WP_003402250.1	class I SAM-dependent methyltransferase	69.1	15.7	73.1
MGA_528	LOCUS_05280	sequence1:543224..544138(-)	partial			WP_003419226.1	PPE family protein	56.2	41.9	39.8
MGA_529	LOCUS_05290	sequence1:544897..545031(+)	frameshift,internal_stop_codon	545030..545032(+)	545089,544891	WP_003900675.1	transposase	95.5	17.1	64.3
MGA_534	LOCUS_05340	sequence1:547730..548608(+)	partial			WP_003911666.1	PPE family protein	57.2	35.0	36.5
MGA_559	LOCUS_05590	sequence1:574629..575639(-)	partial			WP_003402327.1	hypothetical protein	33.6	69.1	71.7
MGA_565	LOCUS_05650	sequence1:579961..580218(+)	partial			WP_010908909.1	DUF2599 domain-containing protein	71.8	60.2	63.5
MGA_587	LOCUS_05870	sequence1:601453..602397(+)	partial			WP_003402433.1	thioesterase family protein	68.5	76.6	75.1
MGA_592	LOCUS_05920	sequence1:605373..606164(+)	partial			WP_172591979.1	lysophospholipid acyltransferase family protein	100.0	71.7	92.0
MGA_612	LOCUS_06120	sequence1:622321..622830(+)	partial			WP_003420504.1	helix-turn-helix domain-containing protein	63.3	80.8	42.1
MGA_646	LOCUS_06460	sequence1:654377..655225(+)	partial			WP_091306094.1	chromosome segregation protein	93.6	68.5	24.9
MGA_656	LOCUS_06560	sequence1:664140..664415(+)	frameshift		664098	WP_085147429.1	type II toxin-antitoxin system HicB family antitoxin	84.6	67.0	53.2
MGA_733	LOCUS_07330	sequence1:757376..757927(+)	partial			WP_003403497.1	mycofactocin biosynthesis peptidyl-dipeptidase MftE	97.8	71.3	76.0
MGA_764	LOCUS_07640	sequence1:779428..780009(+)	partial			WP_003900505.1	PPE family protein	87.6	42.7	32.4
MGA_765	LOCUS_07650	sequence1:780119..780439(-)	partial			WP_005112020.1	LLM class flavin-dependent oxidoreductase	46.2	15.9	59.2
MGA_770	LOCUS_07700	sequence1:783822..784388(-)	partial			WP_010886126.1	PPE family protein	91.5	16.6	39.4
MGA_771	LOCUS_07710	sequence1:784443..784748(-)	partial			WP_010886098.1	PecA family PE domain-processing aspartic protease	92.1	10.2	36.2
MGA_795	LOCUS_07950	sequence1:805661..807256(-)	partial			WP_012256222.1	ABC transporter ATP-binding protein	58.9	84.9	41.9
MGA_798	LOCUS_07980	sequence1:809866..811116(+)	frameshift		811086	WP_010908560.1	PPE family protein	77.6	56.5	79.3
MGA_804	LOCUS_08040	sequence1:815107..815664(+)	partial			WP_003906680.1	PPE family protein	100.0	45.2	41.9
MGA_808	LOCUS_08080	sequence1:818685..819920(-)	partial			WP_011036035.1	UbiH/UbiF family hydroxylase	63.0	62.6	27.0
MGA_810	LOCUS_08100	sequence1:820765..821040(-)	partial			WP_010908650.1	lipoprotein LpqH	100.0	56.5	90.1
MGA_834	LOCUS_08340	sequence1:842069..842395(+)	partial			WP_003418301.1	hypothetical protein	72.2	77.7	66.2
MGA_845	LOCUS_08450	sequence1:854100..854822(+)	partial			WP_010907694.1	bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB/ribosomal protein alanine acetyltransferase RimI	92.9	57.1	78.0
MGA_846	LOCUS_08460	sequence1:854872..855339(+)	partial			WP_010907694.1	bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB/ribosomal protein alanine acetyltransferase RimI	100.0	43.2	82.6
MGA_869	LOCUS_08690	sequence1:878766..879251(+)	frameshift		878725,878694	WP_003900043.1	hypothetical protein	89.4	70.6	66.0
MGA_870	LOCUS_08700	sequence1:879258..879578(+)	internal_stop_codon	879576..879578(+)		WP_003900042.1	DNA polymerase Y family protein	94.3	19.0	82.0
MGA_871	LOCUS_08710	sequence1:879603..880502(+)	internal_stop_codon	879576..879578(+)		WP_003900042.1	DNA polymerase Y family protein	100.0	60.2	77.7
MGA_883	LOCUS_08830	sequence1:892185..892760(+)	frameshift		892921,892890,892803,892718	WP_003908228.1	error-prone DNA polymerase DnaE2	77.0	13.7	83.8
MGA_884	LOCUS_08840	sequence1:892970..893149(+)	frameshift		892921,892890,892803,892718	WP_003417885.1	error-prone DNA polymerase DnaE2	100.0	5.4	86.4
MGA_888	LOCUS_08880	sequence1:895060..896904(+)	partial			WP_003900676.1	sensor histidine kinase	94.0	69.1	63.2
MGA_891	LOCUS_08910	sequence1:900159..902132(-)	partial			WP_003408545.1	ATP transporter ATP-binding protein/permease	98.0	73.8	70.4
MGA_894	LOCUS_08940	sequence1:903874..904032(-)	frameshift		903897	WP_003900033.1	NADH:flavin oxidoreductase	94.2	13.4	90.6
MGA_897	LOCUS_08970	sequence1:905182..905547(-)	frameshift		905640,905604	WP_010907871.1	DUF732 domain-containing protein	87.6	67.1	69.8
MGA_915	LOCUS_09150	sequence1:924385..924996(-)	partial			WP_003905037.1	IS110 family transposase	99.0	35.3	74.6
MGA_920	LOCUS_09200	sequence1:929019..929357(-)	partial			WP_010907882.1	succinate dehydrogenase, cytochrome b556 subunit	100.0	73.2	93.8
MGA_927	LOCUS_09270	sequence1:935827..936414(+)	partial			WP_003408805.1	type VII secretion system ESX-5 target PPE27	91.8	50.6	37.5
MGA_928	LOCUS_09280	sequence1:936709..937296(+)	partial			WP_010950601.1	type VII secretion system ESX-5 target PPE25	80.0	43.1	39.2
MGA_929	LOCUS_09290	sequence1:937570..938145(+)	partial			WP_010908184.1	PPE family protein	82.7	37.5	38.4
MGA_930	LOCUS_09300	sequence1:938379..939284(-)	partial			WP_010907884.1	hypothetical protein	45.2	32.2	90.4
MGA_931	LOCUS_09310	sequence1:939818..940102(-)	frameshift		939696,939835,939692	WP_076611786.1	IS3-like element ISMsm7 family transposase	43.6	10.6	78.0
MGA_934	LOCUS_09340	sequence1:942150..942692(+)	partial			WP_003906680.1	PPE family protein	83.3	37.2	42.1
MGA_938	LOCUS_09380	sequence1:945417..946037(+)	partial			WP_003414680.1	PPE family protein	73.3	37.5	41.8
MGA_941	LOCUS_09410	sequence1:947104..947676(+)	partial			WP_010886166.1	PPE family protein	80.0	4.8	40.3
MGA_962	LOCUS_09620	sequence1:973425..973736(+)	frameshift,internal_stop_codon	973381..973383(+)	973347	WP_003417162.1	protein UsfY	96.1	72.3	80.8
MGA_1025	LOCUS_10250	sequence1:1039334..1039699(-)	frameshift		1039905	WP_003416932.1	Rv3235 family protein	97.5	54.0	71.2
MGA_1055	LOCUS_10550	sequence1:1076685..1077260(-)	partial			WP_010950539.1	PPE family protein	79.1	28.2	33.6
MGA_1091	LOCUS_10910	sequence1:1111403..1111648(-)	frameshift		1111744,1111627,1111405,1111375	WP_011730510.1	ISL3-like element ISMsm4 family transposase	91.4	23.3	48.1
MGA_1092	LOCUS_10920	sequence1:1111739..1111948(-)	frameshift		1111744,1111627	WP_011730510.1	ISL3-like element ISMsm4 family transposase	98.6	14.9	64.7
MGA_1094	LOCUS_10940	sequence1:1113235..1113831(+)	partial			WP_003900072.1	PPE family protein	88.4	44.5	36.2
MGA_1110	LOCUS_11100	sequence1:1130388..1130729(+)	frameshift		1130720	WP_003894092.1	hypothetical protein	97.3	44.9	64.5
MGA_1111	LOCUS_11110	sequence1:1130717..1131133(+)	frameshift		1130720	WP_003894092.1	hypothetical protein	91.3	51.0	66.7
MGA_1119	LOCUS_11190	sequence1:1137447..1137749(+)	partial			WP_003410189.1	alpha-crystallin HspX	99.0	68.8	64.6
MGA_1123	LOCUS_11230	sequence1:1140632..1140763(-)	frameshift		1140785	WP_003410189.1	alpha-crystallin HspX	95.3	28.5	63.4
MGA_1124	LOCUS_11240	sequence1:1140738..1140932(-)	frameshift		1140785	WP_003410189.1	alpha-crystallin HspX	75.0	33.3	64.6
MGA_1125	LOCUS_11250	sequence1:1141733..1142404(+)	partial			WP_013225629.1	hypothetical protein	35.9	68.4	37.5
MGA_1127	LOCUS_11270	sequence1:1142965..1143177(-)	internal_stop_codon	1142965..1142967(-)		WP_003899121.1	universal stress protein	78.6	14.8	63.6
MGA_1128	LOCUS_11280	sequence1:1143327..1143827(-)	partial			WP_004560988.1	nitroreductase family deazaflavin-dependent oxidoreductase	69.9	81.3	39.5
MGA_1129	LOCUS_11290	sequence1:1143940..1144488(-)	partial			WP_048065536.1	plasma-membrane proton-efflux P-type ATPase	65.4	14.7	47.1
MGA_1132	LOCUS_11320	sequence1:1148249..1149214(+)	frameshift		1149037	WP_000862095.1	acetate--CoA ligase	77.3	42.3	38.4
MGA_1133	LOCUS_11330	sequence1:1149162..1150037(+)	frameshift		1149043	WP_004399030.1	acetate--CoA ligase	95.9	48.1	53.2
MGA_1143	LOCUS_11430	sequence1:1158000..1158611(+)	frameshift		1157991	WP_003410171.1	universal stress protein	88.7	84.6	32.9
MGA_1179	LOCUS_11790	sequence1:1196834..1197370(-)	partial			WP_013227290.1	bifunctional GNAT family N-acetyltransferase/acetate--CoA ligase family protein	90.4	17.8	34.2
MGA_1184	LOCUS_11840	sequence1:1201958..1202269(+)	partial			WP_015776825.1	slipin family protein	77.7	29.2	70.0
MGA_1188	LOCUS_11880	sequence1:1204155..1204409(-)	partial			WP_003899954.1	type II toxin-antitoxin system RelE/ParE family toxin	98.8	72.8	77.1
MGA_1192	LOCUS_11920	sequence1:1210411..1211550(+)	frameshift		1211559,1211697,1211758,1211343	WP_003402284.1	PPE family protein	82.3	62.2	47.2
MGA_1193	LOCUS_11930	sequence1:1211561..1211950(+)	frameshift		1211349,1211598	WP_010886073.1	PPE family protein	76.0	18.3	66.3
MGA_1210	LOCUS_12100	sequence1:1226252..1226800(+)	internal_stop_codon	1226798..1226800(+)		WP_029104523.1	LLM class F420-dependent oxidoreductase	100.0	55.8	74.7
MGA_1213	LOCUS_12130	sequence1:1229281..1229931(+)	partial			WP_003416599.1	TetR/AcrR family transcriptional regulator	29.6	30.8	82.8
MGA_1218	LOCUS_12180	sequence1:1233756..1234148(+)	partial			WP_003900648.1	integral membrane protein	83.8	72.4	62.4
MGA_1233	LOCUS_12330	sequence1:1250061..1250405(+)	partial			WP_003901551.1	PPE family protein	71.9	28.6	52.1
MGA_1244	LOCUS_12440	sequence1:1259440..1260510(+)	partial			WP_011085265.1	IS630-like element ISBj5 family transposase	51.1	52.6	46.4
MGA_1248	LOCUS_12480	sequence1:1264140..1264457(+)	partial			WP_003416124.1	hypothetical protein	87.6	60.7	54.8
MGA_1275	LOCUS_12750	sequence1:1286909..1287400(+)	partial			WP_002668780.1	DUF4143 domain-containing protein	96.9	38.1	39.3
MGA_1276	LOCUS_12760	sequence1:1287405..1288178(+)	frameshift		1287394	WP_002668780.1	DUF4143 domain-containing protein	68.1	40.0	31.7
MGA_1277	LOCUS_12770	sequence1:1288263..1288928(-)	partial			WP_003414409.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	43.0	32.7	53.1
MGA_1278	LOCUS_12780	sequence1:1289483..1290061(+)	partial			WP_013229970.1	DivIVA domain-containing protein	49.5	83.0	42.7
MGA_1282	LOCUS_12820	sequence1:1292628..1293845(-)	partial			WP_003401488.1	type VII secretion system ESX-3 target PPE4	59.5	43.7	49.2
MGA_1283	LOCUS_12830	sequence1:1294216..1295424(-)	partial			WP_005095821.1	PPE family protein	45.3	35.9	57.7
MGA_1289	LOCUS_12890	sequence1:1304888..1305271(+)	frameshift		1304891	WP_011727218.1	cytochrome P450	98.4	27.5	51.2
MGA_1292	LOCUS_12920	sequence1:1309388..1309666(-)	frameshift,internal_stop_codon	1309773..1309775(-)	1309670,1309847	WP_003419793.1	class I SAM-dependent methyltransferase	97.8	40.8	49.0
MGA_1302	LOCUS_13020	sequence1:1325230..1325736(+)	partial			WP_003415989.1	FCD domain-containing protein	38.1	17.8	50.6
MGA_1303	LOCUS_13030	sequence1:1326245..1326457(+)	partial			WP_011730501.1	DUF302 domain-containing protein	50.0	26.3	77.1
MGA_1306	LOCUS_13060	sequence1:1327286..1327873(-)	partial			WP_003900467.1	PPE family protein	78.5	63.4	39.0
MGA_1308	LOCUS_13080	sequence1:1328849..1329520(+)	partial			WP_003900675.1	transposase	29.6	28.5	68.6
MGA_1348	LOCUS_13480	sequence1:1371936..1373051(+)	partial			WP_010950374.1	PPE family protein	51.5	37.9	57.1
MGA_1349	LOCUS_13490	sequence1:1373380..1374456(+)	partial			WP_010950374.1	PPE family protein	49.7	33.2	60.1
MGA_1364	LOCUS_13640	sequence1:1390604..1390849(-)	partial			WP_011728300.1	NAD(P)H:quinone oxidoreductase	80.2	32.0	80.0
MGA_1376	LOCUS_13760	sequence1:1402978..1403619(+)	partial			WP_010908478.1	HU family DNA-binding protein	51.2	54.5	97.2
MGA_1405	LOCUS_14050	sequence1:1433266..1433820(-)	partial			WP_003414088.1	PPE family protein	98.9	48.4	36.6
MGA_1406	LOCUS_14060	sequence1:1433897..1434205(-)	partial			WP_003412039.1	PE family protein	90.2	22.3	43.5
MGA_1439	LOCUS_14390	sequence1:1473945..1474802(+)	partial			WP_003112656.1	TauD/TfdA family dioxygenase	73.0	73.1	30.1
MGA_1442	LOCUS_14420	sequence1:1476391..1477431(+)	partial			WP_005694586.1	tRNA pseudouridine(13) synthase TruD	50.3	46.6	29.9
MGA_1444	LOCUS_14440	sequence1:1478826..1480193(+)	partial			WP_011141291.1	radical SAM protein	36.5	35.2	32.1
MGA_1455	LOCUS_14550	sequence1:1491408..1491809(-)	partial			WP_003414678.1	M23 family metallopeptidase	82.7	44.2	85.5
MGA_1461	LOCUS_14610	sequence1:1497621..1498118(+)	partial			WP_011727224.1	MPT63 family protein	87.3	40.4	42.1
MGA_1498	LOCUS_14980	sequence1:1535043..1536875(+)	frameshift		1534811,1534790,1534895	WP_010908402.1	translation initiation factor IF-2	100.0	66.0	95.7
MGA_1505	LOCUS_15050	sequence1:1542675..1543199(-)	frameshift		1543275	WP_003414158.1	DUF3558 family protein	100.0	82.3	78.9
MGA_1517	LOCUS_15170	sequence1:1556061..1556456(+)	partial			WP_003899476.1	Lrp/AsnC family transcriptional regulator	100.0	73.2	91.6
MGA_1575	LOCUS_15750	sequence1:1611429..1612061(+)	partial			WP_003411053.1	PPE family protein	83.3	37.4	29.4
MGA_1578	LOCUS_15780	sequence1:1616675..1617028(+)	partial			WP_010908067.1	LysM peptidoglycan-binding domain-containing protein	100.0	71.3	82.1
MGA_1579	LOCUS_15790	sequence1:1617324..1617656(+)	partial			WP_010908068.1	transcriptional regulator NrdR	98.2	70.1	97.2
MGA_1580	LOCUS_15800	sequence1:1617892..1618449(-)	frameshift		1618414	WP_003977970.1	LysR family transcriptional regulator	77.3	47.5	30.8
MGA_1585	LOCUS_15850	sequence1:1622376..1623038(+)	partial			WP_013223253.1	trypsin-like peptidase domain-containing protein	86.8	69.4	41.7
MGA_1618	LOCUS_16180	sequence1:1649396..1649743(-)	frameshift		1649298,1649476,1649741	WP_010908088.1	ArsB/NhaD family transporter	76.5	20.5	77.3
MGA_1659	LOCUS_16590	sequence1:1685211..1685522(+)	partial			WP_003400655.1	dormancy-associated translation inhibitor	74.8	28.9	55.7
MGA_1672	LOCUS_16720	sequence1:1703571..1703912(-)	partial			WP_013223393.1	long-chain fatty acid--CoA ligase	66.4	14.4	46.7
MGA_1680	LOCUS_16800	sequence1:1712362..1712913(+)	partial			WP_012257492.1	alpha/beta hydrolase	54.1	30.4	36.4
MGA_1685	LOCUS_16850	sequence1:1716249..1717445(-)	partial			WP_010908330.1	diguanylate cyclase	73.9	52.4	55.1
MGA_1719	LOCUS_17190	sequence1:1747206..1747880(+)	partial			WP_011728720.1	hypothetical protein	70.1	65.7	60.5
MGA_1731	LOCUS_17310	sequence1:1764901..1765266(+)	frameshift		1765267,1765239	WP_010886090.1	PE family protein	92.6	12.7	65.2
MGA_1736	LOCUS_17360	sequence1:1770340..1770528(+)	partial			WP_005109726.1	dihydrodipicolinate synthase family protein	66.1	13.9	61.0
MGA_1741	LOCUS_17410	sequence1:1774992..1775177(+)	partial			WP_003412549.1	PPE family protein	96.7	30.4	45.8
MGA_1743	LOCUS_17430	sequence1:1776081..1776665(+)	partial			WP_003899929.1	PPE family protein	88.7	44.2	31.8
MGA_1771	LOCUS_17710	sequence1:1803987..1804589(-)	partial			WP_003900467.1	PPE family protein	79.5	65.8	38.8
MGA_1776	LOCUS_17760	sequence1:1808735..1810399(-)	partial			WP_010886177.1	PE family protein	22.0	20.9	59.8
MGA_1785	LOCUS_17850	sequence1:1820082..1821404(+)	frameshift		1821206	WP_010907782.1	PPE family protein	74.3	58.9	65.7
MGA_1786	LOCUS_17860	sequence1:1821475..1821708(+)	frameshift		1821209,1821206	WP_003407230.1	PPE family protein	100.0	14.3	77.9
MGA_1788	LOCUS_17880	sequence1:1822250..1823170(+)	partial			WP_003407230.1	PPE family protein	59.2	33.4	58.6
MGA_1791	LOCUS_17910	sequence1:1824009..1824947(+)	partial			WP_010907782.1	PPE family protein	56.4	32.7	69.9
MGA_1824	LOCUS_18240	sequence1:1856283..1856900(+)	partial			WP_003407366.1	wax ester/triacylglycerol synthase family O-acyltransferase	99.0	56.4	58.7
MGA_1836	LOCUS_18360	sequence1:1872052..1872261(-)	partial			WP_003898881.1	hypothetical protein	92.8	47.1	70.3
MGA_1846	LOCUS_18460	sequence1:1883251..1884363(+)	partial			WP_011727070.1	PPE family protein	51.6	36.5	55.0
MGA_1850	LOCUS_18500	sequence1:1888178..1888813(+)	frameshift		1888073	WP_010907825.1	transcriptional regulator	100.0	82.3	90.0
MGA_1851	LOCUS_18510	sequence1:1888865..1891450(+)	partial			WP_003894509.1	Fe-S cluster assembly protein SufB	39.8	71.9	96.8
MGA_1910	LOCUS_19100	sequence1:1970075..1970464(+)	frameshift		1970070	WP_003419327.1	DUF559 domain-containing protein	98.4	41.2	55.9
MGA_1917	LOCUS_19170	sequence1:1976007..1976450(-)	partial			WP_003407725.1	MliC family protein	98.0	72.1	74.3
MGA_1955	LOCUS_19550	sequence1:2018014..2018676(+)	frameshift,internal_stop_codon	2018674..2018676(+)	2018742	WP_197492547.1	TIGR02234 family membrane protein	100.0	83.3	80.9
MGA_1960	LOCUS_19600	sequence1:2022631..2023092(+)	partial			WP_003408004.1	TM2 domain-containing protein	66.0	69.2	84.2
MGA_1992	LOCUS_19920	sequence1:2062156..2062587(+)	partial			WP_081439339.1	translation initiation factor IF-3	100.0	70.8	90.9
MGA_2027	LOCUS_20270	sequence1:2115303..2115452(-)	frameshift		2115439	WP_003910339.1	TfuA-like protein	95.9	9.5	70.2
MGA_2028	LOCUS_20280	sequence1:2115428..2115799(-)	frameshift,internal_stop_codon	2115896..2115898(-)	2115439	WP_003900327.1	TfuA-like protein	95.9	23.7	62.7
MGA_2029	LOCUS_20290	sequence1:2115896..2116753(-)	internal_stop_codon	2115896..2115898(-)		WP_003900327.1	TfuA-like protein	100.0	57.1	72.6
MGA_2030	LOCUS_20300	sequence1:2116750..2117166(-)	frameshift		2117263	WP_003898850.1	YcaO-like family protein	98.6	31.0	69.9
MGA_2031	LOCUS_20310	sequence1:2117159..2117698(-)	frameshift		2117757,2117262	WP_010950535.1	YcaO-like family protein	83.8	34.2	72.0
MGA_2045	LOCUS_20450	sequence1:2131144..2131572(+)	partial			WP_003906680.1	PPE family protein	44.4	15.4	58.7
MGA_2069	LOCUS_20690	sequence1:2157975..2158439(+)	partial			WP_151613681.1	Cu(I)-responsive transcriptional regulator	70.8	64.3	34.9
MGA_2073	LOCUS_20730	sequence1:2160032..2160853(-)	partial			WP_013222671.1	methyltransferase domain-containing protein	74.7	84.6	61.2
MGA_2086	LOCUS_20860	sequence1:2174461..2175330(+)	partial			WP_003906993.1	PPE family protein	65.1	32.5	59.4
MGA_2091	LOCUS_20910	sequence1:2180285..2180656(-)	partial			WP_003897690.1	thiocyanate hydrolase subunit beta	72.4	78.8	71.9
MGA_2096	LOCUS_20960	sequence1:2184210..2184920(+)	frameshift		2185025,2184884,2185085	WP_003899979.1	bifunctional GNAT family N-acetyltransferase/aminoglycoside 3'-phosphotransferase/choline kinase family protein	86.4	43.0	72.1
MGA_2101	LOCUS_21010	sequence1:2189720..2191603(-)	partial			WP_011015416.1	cytochrome b/b6 domain-containing protein	49.9	48.2	41.1
MGA_2119	LOCUS_21190	sequence1:2215644..2215871(+)	partial			WP_003408807.1	type VII secretion system ESX-5 target PE19	84.0	63.6	46.0
MGA_2161	LOCUS_21610	sequence1:2262861..2263166(+)	partial			WP_004114894.1	hypothetical protein	86.1	65.6	41.4
MGA_2190	LOCUS_21900	sequence1:2293651..2293902(-)	frameshift		2293713	WP_005082139.1	nuclear transport factor 2 family protein	74.7	41.9	66.1
MGA_2194	LOCUS_21940	sequence1:2296396..2296992(-)	partial			WP_011948908.1	nucleoside deaminase	45.5	55.4	50.0
MGA_2200	LOCUS_22000	sequence1:2301502..2302047(-)	partial			WP_011729088.1	alcohol dehydrogenase catalytic domain-containing protein	67.4	36.1	59.8
MGA_2206	LOCUS_22060	sequence1:2305886..2306185(-)	frameshift		2306151	WP_041323116.1	class I SAM-dependent methyltransferase	88.9	29.0	86.4
MGA_2207	LOCUS_22070	sequence1:2306356..2306946(-)	partial			WP_003404747.1	PPE family protein	83.2	39.0	41.2
MGA_2210	LOCUS_22100	sequence1:2309186..2309680(-)	partial			WP_003905677.1	macro domain-containing protein	98.8	47.2	83.3
MGA_2221	LOCUS_22210	sequence1:2319985..2320455(-)	partial			WP_003899074.1	DUF4262 domain-containing protein	100.0	72.6	54.5
MGA_2223	LOCUS_22230	sequence1:2321653..2322039(-)	partial			WP_003409568.1	YbhB/YbcL family Raf kinase inhibitor-like protein	100.0	65.2	70.2
MGA_2227	LOCUS_22270	sequence1:2326477..2327544(-)	partial			WP_013225844.1	non-reducing end alpha-L-arabinofuranosidase family hydrolase	95.8	37.2	32.0
MGA_2231	LOCUS_22310	sequence1:2331811..2333373(-)	partial			WP_011727070.1	PPE family protein	34.8	34.6	53.0
MGA_2241	LOCUS_22410	sequence1:2344847..2345326(+)	partial			WP_010908659.1	zf-HC2 domain-containing protein	99.4	66.7	72.2
MGA_2249	LOCUS_22490	sequence1:2354035..2354244(+)	partial			WP_003975987.1	dihydrofolate reductase family protein	81.2	29.8	53.6
MGA_2275	LOCUS_22750	sequence1:2377995..2378579(+)	frameshift		2378573	WP_010908328.1	CDP-diacylglycerol diphosphatase	99.5	72.0	86.0
MGA_2288	LOCUS_22880	sequence1:2389893..2390096(-)	frameshift		2390098,2390238,2389906	WP_013470245.1	hypothetical protein	98.5	10.2	77.3
MGA_2296	LOCUS_22960	sequence1:2399596..2401194(+)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	53.4	54.1	51.9
MGA_2297	LOCUS_22970	sequence1:2401244..2401519(-)	partial			WP_003410047.1	SDR family oxidoreductase	69.2	34.6	50.0
MGA_2307	LOCUS_23070	sequence1:2413685..2413948(-)	partial			WP_003410196.1	DUF3097 domain-containing protein	100.0	31.1	88.5
MGA_2322	LOCUS_23220	sequence1:2427344..2427799(+)	partial			WP_010908746.1	hypothetical protein	53.6	69.5	45.8
MGA_2323	LOCUS_23230	sequence1:2428276..2428605(+)	partial			WP_005110344.1	recombinase family protein	87.2	47.5	44.1
MGA_2326	LOCUS_23260	sequence1:2432554..2439057(-)	partial			WP_010886138.1	type I polyketide synthase	100.0	51.7	80.8
MGA_2355	LOCUS_23550	sequence1:2471370..2472947(+)	partial			WP_010950653.1	alpha/beta hydrolase	41.3	33.1	60.4
MGA_2359	LOCUS_23590	sequence1:2475247..2475675(+)	partial			WP_003412695.1	hypothetical protein	99.3	61.3	41.8
MGA_2360	LOCUS_23600	sequence1:2477043..2477852(+)	frameshift,internal_stop_codon	2477251..2477253(+)	2477165	WP_010950655.1	DUF5631 domain-containing protein	92.2	35.4	43.0
MGA_2364	LOCUS_23640	sequence1:2481292..2482041(-)	partial			WP_010908279.1	DUF4333 domain-containing protein	49.4	45.2	84.6
MGA_2381	LOCUS_23810	sequence1:2500817..2501179(+)	partial			WP_010908267.1	lipoprotein	98.3	60.8	83.9
MGA_2402	LOCUS_24020	sequence1:2521988..2522290(-)	partial			WP_003411107.1	hypothetical protein	100.0	74.5	89.2
MGA_2410	LOCUS_24100	sequence1:2529735..2530286(+)	partial			WP_007485360.1	DUF6088 family protein	65.0	49.4	29.3
MGA_2414	LOCUS_24140	sequence1:2533185..2533523(-)	frameshift		2533525	WP_012296512.1	recombinase family protein	81.2	16.6	80.2
MGA_2418	LOCUS_24180	sequence1:2535973..2536221(+)	frameshift		2535914,2535853	WP_003899953.1	type II toxin-antitoxin system Phd/YefM family antitoxin	100.0	54.7	81.7
MGA_2420	LOCUS_24200	sequence1:2537267..2537977(+)	partial			WP_003411129.1	phosphoribosyltransferase family protein	98.3	64.8	78.4
MGA_2425	LOCUS_24250	sequence1:2540616..2541110(-)	partial			WP_172591959.1	YggS family pyridoxal phosphate-dependent enzyme	100.0	63.8	84.1
MGA_2460	LOCUS_24600	sequence1:2578833..2579162(-)	frameshift		2579269	WP_010907994.1	peptidoglycan hydrolase RipC	100.0	29.1	95.4
MGA_2461	LOCUS_24610	sequence1:2579147..2579941(-)	frameshift		2579275	WP_010907994.1	peptidoglycan hydrolase RipC	84.8	58.8	62.9
MGA_2512	LOCUS_25120	sequence1:2633902..2634129(-)	partial			WP_003897072.1	alpha/beta fold hydrolase	48.0	9.7	63.9
MGA_2517	LOCUS_25170	sequence1:2636401..2636964(-)	partial			WP_003898980.1	PPE family protein	83.4	40.4	37.1
MGA_2538	LOCUS_25380	sequence1:2659246..2659827(-)	partial			WP_011729750.1	SHOCT domain-containing protein	92.7	69.7	46.9
MGA_2558	LOCUS_25580	sequence1:2678001..2678909(+)	partial			WP_011122363.1	alpha/beta hydrolase	40.1	35.5	32.2
MGA_2563	LOCUS_25630	sequence1:2683552..2684115(-)	frameshift,internal_stop_codon	2683560..2683562(-)	2683544,2683569,2684107	WP_013227542.1	glycoside hydrolase family 15 protein	95.2	28.9	50.0
MGA_2569	LOCUS_25690	sequence1:2689583..2690077(+)	partial			WP_005111053.1	catalase	67.7	15.8	83.8
MGA_2570	LOCUS_25700	sequence1:2690031..2690774(+)	partial			WP_005111053.1	catalase	100.0	35.2	54.8
MGA_2577	LOCUS_25770	sequence1:2694153..2694917(+)	partial			WP_064243802.1	SDR family oxidoreductase	71.3	70.5	37.4
MGA_2578	LOCUS_25780	sequence1:2695056..2695307(+)	frameshift,internal_stop_codon	2695305..2695307(+)	2695041	WP_005062831.1	superoxide dismutase	54.2	21.7	82.2
MGA_2581	LOCUS_25810	sequence1:2698505..2699392(+)	frameshift		2699236	WP_013228346.1	enolase C-terminal domain-like protein	83.1	66.4	53.1
MGA_2582	LOCUS_25820	sequence1:2699326..2699508(+)	frameshift		2699239	WP_013228346.1	enolase C-terminal domain-like protein	95.0	15.6	52.6
MGA_2583	LOCUS_25830	sequence1:2699586..2701079(+)	frameshift		2700797	WP_013228347.1	FAD-binding and (Fe-S)-binding domain-containing protein	81.3	41.0	59.3
MGA_2584	LOCUS_25840	sequence1:2701010..2702296(+)	frameshift		2700803	WP_013228347.1	FAD-binding and (Fe-S)-binding domain-containing protein	93.5	46.6	55.3
MGA_2585	LOCUS_25850	sequence1:2702261..2702746(-)	partial			WP_013227026.1	UdgX family uracil-DNA binding protein	90.1	67.1	56.2
MGA_2590	LOCUS_25900	sequence1:2705598..2707094(-)	partial			WP_013531947.1	molybdopterin-binding protein	36.3	67.7	45.1
MGA_2594	LOCUS_25940	sequence1:2709917..2710816(-)	partial			WP_005084793.1	PE-PPE domain-containing protein	46.2	43.6	36.4
MGA_2605	LOCUS_26050	sequence1:2721812..2722036(-)	partial			WP_003411924.1	carboxymuconolactone decarboxylase family protein	78.4	20.4	74.1
MGA_2622	LOCUS_26220	sequence1:2740202..2740393(+)	partial			WP_011729863.1	acyl-CoA dehydrogenase	61.9	6.1	69.2
MGA_2626	LOCUS_26260	sequence1:2745685..2745990(+)	partial			WP_005060060.1	sulfate adenylyltransferase subunit CysD	39.6	19.0	53.4
MGA_2641	LOCUS_26410	sequence1:2762285..2762548(-)	internal_stop_codon	2762576..2762578(-),2762660..2762662(-)		WP_003899285.1	phospholipase C	82.8	14.1	68.1
MGA_2642	LOCUS_26420	sequence1:2762660..2763070(-)	internal_stop_codon	2762576..2762578(-)		WP_003899285.1	phospholipase C	94.1	30.3	59.4
MGA_2671	LOCUS_26710	sequence1:2788802..2789107(-)	partial			WP_003412287.1	mycobactin biosynthesis salicylate synthase MbtI	100.0	22.4	88.1
MGA_2676	LOCUS_26760	sequence1:2795514..2796131(+)	frameshift		2795413	WP_003412306.1	sirohydrochlorin chelatase	100.0	71.9	72.2
MGA_2698	LOCUS_26980	sequence1:2818685..2820727(-)	partial			WP_011056673.1	mechanosensitive ion channel	12.4	14.5	45.3
MGA_2702	LOCUS_27020	sequence1:2825622..2825891(+)	partial			WP_011727034.1	dihydrodipicolinate reductase	82.0	20.3	53.4
MGA_2767	LOCUS_27660	sequence1:2900029..2900559(+)	partial			WP_011141333.1	hypothetical protein	61.4	57.4	32.4
MGA_2770	LOCUS_27690	sequence1:2902001..2902297(+)	partial			WP_011391158.1	helix-turn-helix transcriptional regulator	62.2	62.9	52.5
MGA_2774	LOCUS_27730	sequence1:2904101..2905504(-)	partial			WP_010908330.1	diguanylate cyclase	86.7	72.1	57.4
MGA_2776	LOCUS_27750	sequence1:2906171..2907649(+)	partial			WP_048066275.1	PKD domain-containing protein	55.9	16.7	39.8
MGA_2780	LOCUS_27790	sequence1:2909767..2910243(+)	partial			WP_010908746.1	hypothetical protein	52.5	69.5	50.6
MGA_2782	LOCUS_27810	sequence1:2911220..2911819(+)	frameshift		2911783	WP_003405897.1	HNH endonuclease signature motif containing protein	89.4	39.5	48.3
MGA_2783	LOCUS_27820	sequence1:2911846..2912610(+)	frameshift		2911783	WP_003405897.1	HNH endonuclease signature motif containing protein	94.5	53.0	72.9
MGA_2804	LOCUS_28030	sequence1:2934728..2934970(-)	partial			WP_010907720.1	DUF3618 domain-containing protein	63.8	68.0	86.3
MGA_2808	LOCUS_28070	sequence1:2937355..2944842(-)	frameshift		2944934	WP_010908189.1	type I polyketide synthase	99.9	80.6	86.4
MGA_2809	LOCUS_28080	sequence1:2944881..2946563(-)	frameshift		2944934	WP_003901420.1	fatty acid synthase	97.9	17.8	88.7
MGA_2815	LOCUS_28140	sequence1:2951049..2951828(-)	partial			WP_084163556.1	DivIVA domain-containing protein	85.7	70.6	37.3
MGA_2827	LOCUS_28260	sequence1:2962266..2962871(-)	partial			WP_003408979.1	type VII secretion system ESX-5 target PPE26	86.1	44.0	53.4
MGA_2829	LOCUS_28280	sequence1:2963546..2963905(-)	partial			WP_003893583.1	GntR family transcriptional regulator	86.6	46.4	64.1
MGA_2849	LOCUS_28480	sequence1:2981894..2986360(+)	partial			WP_005112820.1	Stk1 family PASTA domain-containing Ser/Thr kinase	17.9	43.0	43.8
MGA_2890	LOCUS_28880	sequence1:3037459..3038046(+)	frameshift		3037824,3038022,3037752,3037995,3037998,3038040,3037817,3038044	WP_010886177.1	PE family protein	62.6	20.9	57.4
MGA_2891	LOCUS_28890	sequence1:3038069..3038713(+)	frameshift,internal_stop_codon	3038712..3038714(+),3038711..3038713(+)	3038304,3038656,3038722,3038749,3038756,3038758,3038022,3038760,3038251,3038707,3038294,3038043,3038716,3038653,3038719	WP_003910913.1	PE family protein	15.4	4.8	78.8
MGA_2907	LOCUS_29050	sequence1:3052264..3052833(-)	partial			WP_011730246.1	alpha/beta fold hydrolase	91.0	51.6	44.5
MGA_2916	LOCUS_29140	sequence1:3063836..3064330(-)	partial			WP_003911666.1	PPE family protein	96.3	33.5	34.0
MGA_2918	LOCUS_29160	sequence1:3066696..3067268(-)	internal_stop_codon	3067287..3067289(-)		WP_003406375.1	transcriptional regulator AbmR	98.9	82.7	87.2
MGA_2931	LOCUS_29290	sequence1:3080287..3080814(-)	partial			WP_005110745.1	siderophore-interacting protein	100.0	73.8	66.9
MGA_2982	LOCUS_29800	sequence1:3137456..3138169(-)	partial			WP_003900467.1	PPE family protein	74.7	72.8	53.1
MGA_2985	LOCUS_29830	sequence1:3140342..3140920(-)	partial			WP_003901140.1	PPE family protein	91.1	44.7	39.0
MGA_2987	LOCUS_29850	sequence1:3141330..3141905(-)	partial			WP_003901140.1	PPE family protein	89.5	43.9	37.9
MGA_2992	LOCUS_29900	sequence1:3146507..3146743(+)	frameshift		3146505	WP_003900502.1	type VII secretion system ESX-5 protein EsxJ	84.6	67.3	71.2
MGA_2995	LOCUS_29930	sequence1:3149282..3149476(-)	partial			WP_003409689.1	TIGR03085 family metal-binding protein	98.4	29.4	60.3
MGA_3016	LOCUS_30140	sequence1:3180622..3180993(+)	partial			WP_003406182.1	PadR family transcriptional regulator	63.4	45.0	62.9
MGA_3032	LOCUS_30300	sequence1:3201487..3202311(+)	frameshift,internal_stop_codon	3202309..3202311(+)	3202435,3202437,3202440,3202584,3202506,3202507,3202509,3202350,3202353,3202449,3202359,3202296,3202585,3202587	WP_009939865.1	PE family protein	42.3	21.8	67.2
MGA_3049	LOCUS_30470	sequence1:3216006..3216593(-)	partial			WP_003405938.1	CPBP family intramembrane metalloprotease	100.0	69.1	67.2
MGA_3054	LOCUS_30520	sequence1:3220145..3220408(+)	frameshift		3220345,3220372	WP_010886163.1	PPE family protein	77.0	2.7	41.2
MGA_3056	LOCUS_30540	sequence1:3222124..3222489(-)	frameshift		3222557	WP_011730081.1	cytochrome P450	99.2	27.2	55.8
MGA_3064	LOCUS_30620	sequence1:3233086..3233481(-)	partial			WP_010908041.1	hypothetical protein	45.8	75.9	86.7
MGA_3068	LOCUS_30660	sequence1:3236081..3236680(+)	partial			WP_010908039.1	TetR/AcrR family transcriptional regulator	35.2	51.1	82.9
MGA_3071	LOCUS_30690	sequence1:3238461..3240236(-)	partial			WP_003899118.1	PecA family PE domain-processing aspartic protease	25.4	26.9	54.0
MGA_3075	LOCUS_30730	sequence1:3243712..3244407(+)	frameshift		3243706	WP_003898734.1	hypothetical protein	100.0	80.8	78.8
MGA_3077	LOCUS_30750	sequence1:3245036..3245554(-)	partial			WP_003898733.1	hypothetical protein	86.6	64.7	70.7
MGA_3098	LOCUS_30960	sequence1:3265792..3266556(-)	frameshift		3266548	WP_011730421.1	hypothetical protein	98.8	55.1	73.3
MGA_3107	LOCUS_31050	sequence1:3274623..3275306(-)	partial			WP_010908871.1	RDD family protein	73.1	66.7	89.8
MGA_3120	LOCUS_31180	sequence1:3288382..3288672(+)	partial			WP_003405645.1	lipoprotein LpqV	94.8	65.5	75.8
MGA_3143	LOCUS_31410	sequence1:3314406..3315440(-)	partial			WP_003400938.1	cytochrome P450	88.1	68.7	47.4
MGA_3163	LOCUS_31610	sequence1:3338872..3339765(-)	partial			WP_001260128.1	lipase family protein	49.8	65.4	37.1
MGA_3173	LOCUS_31710	sequence1:3350745..3351032(-)	partial			WP_003899794.1	hypothetical protein	70.5	59.8	86.6
MGA_3178	LOCUS_31760	sequence1:3354131..3354739(-)	partial			WP_003409061.1	PPE family protein	74.8	32.8	38.8
MGA_3183	LOCUS_31810	sequence1:3358278..3358853(-)	partial			WP_003900723.1	PPE family protein	80.1	37.5	38.7
MGA_3189	LOCUS_31870	sequence1:3367135..3368526(+)	partial			WP_003910253.1	hypothetical protein	64.4	63.0	28.6
MGA_3195	LOCUS_31930	sequence1:3373855..3374502(-)	internal_stop_codon	3374539..3374541(-)		WP_003405165.1	DUF5642 family protein	99.1	84.9	65.0
MGA_3201	LOCUS_31990	sequence1:3378301..3379023(+)	internal_stop_codon	3378190..3378192(+)		WP_209912946.1	IS481 family transposase	99.2	58.1	49.2
MGA_3207	LOCUS_32050	sequence1:3384084..3384401(+)	partial			WP_010907580.1	zinc ribbon domain-containing protein	55.2	58.6	91.4
MGA_3210	LOCUS_32080	sequence1:3386319..3386912(-)	partial			WP_003900072.1	PPE family protein	91.9	45.8	38.8
MGA_3216	LOCUS_32140	sequence1:3391101..3392342(-)	partial			WP_011986648.1	sugar phosphate isomerase/epimerase	59.6	84.2	30.9
MGA_3232	LOCUS_32300	sequence1:3412066..3412386(+)	partial			WP_003404920.1	hypothetical protein	94.3	71.9	55.0
MGA_3246	LOCUS_32440	sequence1:3429637..3430044(+)	partial			WP_011730597.1	hypothetical protein	83.0	49.3	57.1
MGA_3248	LOCUS_32460	sequence1:3433072..3433344(+)	partial			WP_010907562.1	chorismate mutase	86.7	74.3	93.6
MGA_3253	LOCUS_32510	sequence1:3437719..3438624(+)	partial			WP_011730613.1	diiron oxygenase	100.0	73.1	73.4
MGA_3264	LOCUS_32620	sequence1:3450693..3451274(+)	partial			WP_003906903.1	PPE family protein	79.8	40.3	34.8
MGA_3271	LOCUS_32690	sequence1:3458650..3459297(+)	partial			WP_011730642.1	poly-gamma-glutamate hydrolase family protein	82.3	50.3	72.3
MGA_3277	LOCUS_32750	sequence1:3466188..3466580(-)	partial			WP_003413614.1	archease	100.0	72.6	69.2
MGA_3286	LOCUS_32840	sequence1:3476294..3476668(+)	partial			WP_003901140.1	PPE family protein	72.6	23.0	38.5
MGA_3324	LOCUS_33220	sequence1:3517606..3518706(-)	partial			WP_201215921.1	alpha/beta hydrolase	69.4	63.2	28.7
MGA_3329	LOCUS_33270	sequence1:3521485..3522180(+)	partial			WP_003900223.1	resuscitation-promoting factor protein RpfA	61.5	35.4	82.6
MGA_3341	LOCUS_33390	sequence1:3532537..3533082(+)	partial			WP_010908746.1	hypothetical protein	49.7	75.4	51.1
MGA_3344	LOCUS_33420	sequence1:3534977..3535618(+)	partial			WP_005102458.1	class I SAM-dependent methyltransferase	74.6	67.2	34.5
MGA_3354	LOCUS_33520	sequence1:3545418..3546143(-)	frameshift		3546430,3546150	WP_083087609.1	FadD3 family acyl-CoA ligase	100.0	50.3	81.7
MGA_3355	LOCUS_33530	sequence1:3546282..3546635(-)	frameshift		3546150	WP_083087609.1	FadD3 family acyl-CoA ligase	88.9	21.9	78.8
MGA_3357	LOCUS_33550	sequence1:3548119..3548445(+)	partial			WP_003896243.1	acyl-CoA dehydrogenase family protein	58.3	21.3	56.2
MGA_3359	LOCUS_33570	sequence1:3549291..3549530(-)	frameshift		3549537	WP_011730135.1	Xaa-Pro peptidase family protein	87.3	16.2	55.1
MGA_3361	LOCUS_33590	sequence1:3550640..3551179(-)	frameshift		3550602,3550702	WP_011730139.1	SDR family oxidoreductase	87.7	77.2	45.4
MGA_3368	LOCUS_33660	sequence1:3558692..3558952(-)	partial			WP_011730160.1	methylmalonyl-CoA mutase family protein	50.0	8.1	76.7
MGA_3374	LOCUS_33720	sequence1:3563397..3565118(+)	partial			WP_014538142.1	CocE/NonD family hydrolase	87.3	72.4	25.8
MGA_3376	LOCUS_33740	sequence1:3565844..3566545(-)	partial			WP_013224586.1	GrpB family protein	96.1	51.9	45.1
MGA_3378	LOCUS_33760	sequence1:3567928..3568380(+)	partial			WP_010908746.1	hypothetical protein	63.3	79.7	68.4
MGA_3417	LOCUS_34140	sequence1:3603714..3605225(+)	partial			WP_010886110.1	serine/threonine protein kinase PknH	38.2	30.8	38.1
MGA_3442	LOCUS_34390	sequence1:3632270..3632755(+)	frameshift		3632237,3632277	WP_003403998.1	hypothetical protein	97.5	78.4	60.1
MGA_3458	LOCUS_34550	sequence1:3649649..3650443(+)	frameshift,internal_stop_codon	3650441..3650443(+)	3650452	WP_011087123.1	FAD-dependent oxidoreductase	33.3	22.8	48.3
MGA_3462	LOCUS_34590	sequence1:3654614..3654850(-)	partial			WP_003412549.1	PPE family protein	98.7	39.7	49.4
MGA_3468	LOCUS_34650	sequence1:3659551..3659868(-)	partial			WP_010886133.1	PE family protein	88.6	18.5	37.6
MGA_3469	LOCUS_34660	sequence1:3660646..3660927(-)	frameshift		3660941	WP_003412549.1	PPE family protein	83.9	39.7	53.8
MGA_3485	LOCUS_34820	sequence1:3674414..3675490(+)	partial			WP_011461059.1	FAD-dependent oxidoreductase	72.6	37.4	38.8
MGA_3494	LOCUS_34910	sequence1:3683168..3684553(-)	partial			WP_003403850.1	phosphoglycerate mutase PE_PGRS11	68.8	54.5	67.6
MGA_3507	LOCUS_35040	sequence1:3695589..3696095(-)	partial			WP_003418960.1	mammalian cell entry protein	100.0	69.4	79.8
MGA_3527	LOCUS_35240	sequence1:3714727..3714927(+)	internal_stop_codon	3714688..3714690(+),3714700..3714702(+)		WP_003412551.1	PE family protein	87.9	58.6	65.5
MGA_3545	LOCUS_35420	sequence1:3727562..3728098(-)	partial			WP_007054285.1	fructosamine kinase family protein	97.8	68.1	37.2
MGA_3556	LOCUS_35530	sequence1:3739092..3740105(+)	frameshift		3739976,3739450,3739979,3740012	WP_010886091.1	PE family protein	24.6	13.7	53.0
MGA_3558	LOCUS_35550	sequence1:3741103..3741825(+)	frameshift,internal_stop_codon	3740857..3740859(+)	3741059	WP_003419207.1	NHL repeat-containing protein	95.4	66.8	55.9
MGA_3581	LOCUS_35780	sequence1:3764212..3764787(-)	partial			WP_003419313.1	SDR family oxidoreductase	99.0	73.0	89.9
MGA_3598	LOCUS_35950	sequence1:3780422..3781057(+)	partial			WP_011727014.1	serine/threonine-protein kinase	76.3	14.0	62.7
MGA_3599	LOCUS_35960	sequence1:3781119..3781700(+)	internal_stop_codon	3780930..3780932(+)		WP_011039181.1	kelch repeat-containing protein	86.5	50.0	27.5
MGA_3614	LOCUS_36110	sequence1:3796614..3797060(+)	frameshift		3796629	WP_010907677.1	5-oxoprolinase subunit PxpA	100.0	77.4	62.6
MGA_3634	LOCUS_36310	sequence1:3813051..3814100(-)	frameshift		3813344,3813152,3813347,3812870,3813143,3813133,3813197,3813199,3813200,3813395,3812980,3813013,3813335,3812857,3812859	WP_003410786.1	PE family protein	35.5	25.3	48.4
MGA_3658	LOCUS_36550	sequence1:3838968..3839660(+)	partial			WP_003408551.1	hypothetical protein	73.5	68.3	56.8
MGA_3665	LOCUS_36620	sequence1:3846557..3846730(+)	partial			WP_011727856.1	IS256 family transposase	84.2	11.2	81.6
MGA_3674	LOCUS_36710	sequence1:3859938..3861407(+)	frameshift		3861185,3861092,3861221,3861191,3861192,3861098,3861071,3861200,3861171,3861113,3861083,3861116	WP_010886177.1	PE family protein	24.7	20.7	51.2
MGA_3675	LOCUS_36720	sequence1:3861558..3861959(-)	partial			WP_003899621.1	pilus assembly protein TadG-related protein	65.4	77.6	41.4
MGA_3676	LOCUS_36730	sequence1:3861919..3862245(-)	frameshift		3861927	WP_010886180.1	apoptosis inhibitor	77.8	67.2	66.7
MGA_3724	LOCUS_37210	sequence1:3906569..3908821(+)	partial			WP_013227688.1	SpoIIE family protein phosphatase	91.7	50.6	38.8
MGA_3727	LOCUS_37240	sequence1:3909866..3910231(+)	frameshift		3909857	WP_011727891.1	iron-containing redox enzyme family protein	73.6	26.5	68.9
MGA_3734	LOCUS_37310	sequence1:3916266..3916829(-)	partial			WP_003408979.1	type VII secretion system ESX-5 target PPE26	97.9	47.6	39.9
MGA_3739	LOCUS_37360	sequence1:3919970..3920356(-)	partial			WP_011727909.1	hypothetical protein	66.4	73.3	47.1
MGA_3740	LOCUS_37370	sequence1:3920490..3921200(+)	partial			WP_050039320.1	PadR family transcriptional regulator	61.4	77.1	88.3
MGA_3750	LOCUS_37470	sequence1:3932156..3932488(-)	partial			WP_003419814.1	hypothetical protein	55.5	49.6	53.1
MGA_3785	LOCUS_37820	sequence1:3974920..3975690(-)	frameshift		3974946	WP_003420440.1	wax ester/triacylglycerol synthase family O-acyltransferase	96.5	54.8	74.7
MGA_3803	LOCUS_38000	sequence1:4017311..4017502(+)	frameshift,internal_stop_codon	4017223..4017225(+)	4017219	WP_011731215.1	histidine phosphatase family protein	100.0	31.2	71.4
MGA_3849	LOCUS_38460	sequence1:4082310..4082675(+)	frameshift		4082564	WP_005112911.1	tyrosine-type recombinase/integrase	68.6	21.4	66.3
MGA_3851	LOCUS_38480	sequence1:4084173..4084307(+)	partial			WP_003897767.1	DUF4334 domain-containing protein	97.7	29.9	66.0
MGA_3890	LOCUS_38870	sequence1:4141855..4142157(+)	frameshift		4141786,4141755	WP_005112350.1	hypothetical protein	72.0	26.5	38.9
MGA_3900	LOCUS_38970	sequence1:4150985..4151419(+)	frameshift		4151413	WP_003899719.1	metallopeptidase family protein	79.9	83.9	85.2
MGA_3905	LOCUS_39020	sequence1:4154554..4155489(+)	partial			WP_235624060.1	LCP family protein	93.6	68.0	71.8
MGA_3915	LOCUS_39120	sequence1:4162995..4163390(+)	partial			WP_003897849.1	copper resistance protein CopC	80.2	60.1	42.7
MGA_3939	LOCUS_39360	sequence1:4194321..4195199(+)	partial			WP_010907486.1	MinD/ParA family protein	100.0	49.8	86.6
MGA_3942	LOCUS_39390	sequence1:4197959..4200334(-)	partial			WP_010950952.1	type VII secretion system ESX-1 associated protein EspK	54.4	58.3	51.9
MGA_3966	LOCUS_39630	sequence1:4226834..4227187(+)	frameshift		4226816	WP_010909042.1	thioredoxin-disulfide reductase	100.0	25.5	88.0
