{ "type": "genome", "identifier": "GCF_000340475.1", "organism": "Oceanobacillus kimchii X50", "title": "Oceanobacillus kimchii X50", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000340475.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470215", "wgs_master": "AOCX00000000.1", "refseq_category": "reference genome", "taxid": "1238184", "species_taxid": "746691", "organism_name": "Oceanobacillus kimchii X50", "infraspecific_name": "strain=X50", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/22", "asm_name": "ASM34047v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_000340475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/475/GCF_000340475.1_ASM34047v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3830781", "genome_size_ungapped": "3822411", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000340475.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3833", "protein_coding_gene_count": "3736", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-22", "dateModified": "2013-02-22", "datePublished": "2013-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus kimchii X50" ], "sample_taxid": [ "1238184" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.075 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3830681", "Number of Sequences": "1", "Longest Sequences (bp)": "3830681", "N50 (bp)": "3830681", "Gap Ratio (%)": "0.215993", "GCcontent (%)": "35.2", "Number of CDSs": "3818", "Average Protein Length": "285.4", "Coding Ratio (%)": "85.3", "Number of rRNAs": "10", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus kimchii", "strain": "strain=X50", "accession": "GCA_000340475.1", "taxid": 746691, "species_taxid": 746691, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1276, "total_fragments": 1276, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanobacillus iheyensis", "strain": "strain=HTE831", "accession": "GCA_000011245.1", "taxid": 182710, "species_taxid": 182710, "relation_to_type": "type", "validated": true, "ani": 88.6926, "matched_fragments": 1056, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus profundus", "strain": "strain=DSM 18246", "accession": "GCA_003515705.1", "taxid": 372463, "species_taxid": 372463, "relation_to_type": "type", "validated": true, "ani": 78.7406, "matched_fragments": 187, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus polygoni", "strain": "strain=SA9", "accession": "GCA_008304605.1", "taxid": 1235259, "species_taxid": 1235259, "relation_to_type": "type", "validated": true, "ani": 78.5502, "matched_fragments": 206, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=PT-11", "accession": "GCA_002153375.1", "taxid": 937927, "species_taxid": 937927, "relation_to_type": "type", "validated": true, "ani": 77.5446, "matched_fragments": 183, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus neutriphilus", "strain": "strain=CGMCC 1.7693", "accession": "GCA_014645515.1", "taxid": 531815, "species_taxid": 531815, "relation_to_type": "type", "validated": true, "ani": 77.5367, "matched_fragments": 199, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus sojae", "strain": "strain=NBRC 105379", "accession": "GCA_007991515.1", "taxid": 582851, "species_taxid": 582851, "relation_to_type": "type", "validated": true, "ani": 77.3919, "matched_fragments": 188, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus halodenitrificans", "strain": "strain=JCM 12304", "accession": "GCA_001310895.1", "taxid": 1482, "species_taxid": 1482, "relation_to_type": "type", "validated": true, "ani": 77.2861, "matched_fragments": 121, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus indicus", "strain": "strain=P2-C2", "accession": "GCA_002266285.1", "taxid": 2024554, "species_taxid": 2024554, "relation_to_type": "type", "validated": true, "ani": 77.1683, "matched_fragments": 132, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus salinarum", "strain": "strain=G6-18", "accession": "GCA_014083865.1", "taxid": 1158996, "species_taxid": 1158996, "relation_to_type": "type", "validated": true, "ani": 76.7292, "matched_fragments": 76, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cerasibacillus quisquiliarum", "strain": "strain=DSM 15825", "accession": "GCA_014202495.1", "taxid": 227865, "species_taxid": 227865, "relation_to_type": "type", "validated": true, "ani": 76.1335, "matched_fragments": 68, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cerasibacillus quisquiliarum", "strain": "strain=NBRC 102429", "accession": "GCA_007991195.1", "taxid": 227865, "species_taxid": 227865, "relation_to_type": "type", "validated": true, "ani": 76.0613, "matched_fragments": 67, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus composti", "strain": "strain=DSM 24785", "accession": "GCA_016908465.1", "taxid": 720633, "species_taxid": 720633, "relation_to_type": "type", "validated": true, "ani": 75.7608, "matched_fragments": 63, "total_fragments": 1276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus composti", "strain": "strain=MCCC 1A13240", "accession": "GCA_003856865.1", "taxid": 720633, "species_taxid": 720633, "relation_to_type": "type", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Oceanobacillus", "kimchii", "X50" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }