{ "type": "genome", "identifier": "GCF_000340885.1", "organism": "Clostridium saccharoperbutylacetonicum N1-4(HMT)", "title": "Clostridium saccharoperbutylacetonicum N1-4(HMT)", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000340885.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603265", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "931276", "species_taxid": "36745", "organism_name": "Clostridium saccharoperbutylacetonicum N1-4(HMT)", "infraspecific_name": "strain=N1-4(HMT)", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "ASM34088v1", "asm_submitter": "Georg-August-University Goettingen", "gbrs_paired_asm": "GCA_000340885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/340/885/GCF_000340885.1_ASM34088v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6666445", "genome_size_ungapped": "6666445", "gc_percent": "29.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000340885.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "5997", "protein_coding_gene_count": "5826", "non_coding_gene_count": "110", "pubmed_id": "25323722" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium saccharoperbutylacetonicum N1-4(HMT)" ], "sample_taxid": [ "931276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.809 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6666445", "Number of Sequences": "2", "Longest Sequences (bp)": "6530257", "N50 (bp)": "6530257", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.5", "Number of CDSs": "5944", "Average Protein Length": "311.2", "Coding Ratio (%)": "83.3", "Number of rRNAs": "35", "Number of tRNAs": "70", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium saccharoperbutylacetonicum", "strain": "strain=N1-4(HMT)", "accession": "GCA_000340885.1", "taxid": 36745, 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"below_threshold" }, { "organism_name": "Clostridium mobile", "strain": "strain=MSJ-11", "accession": "GCA_018918285.1", "taxid": 2841512, "species_taxid": 2841512, "relation_to_type": "type", "validated": true, "ani": 75.9114, "matched_fragments": 137, "total_fragments": 2221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", "strain": "strain=LMG 29148", "accession": "GCA_008000835.1", "taxid": 1912871, "species_taxid": 1912871, "relation_to_type": "type", "validated": true, "ani": 75.6137, "matched_fragments": 71, "total_fragments": 2221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerovirgula multivorans", "strain": "strain=SCA", "accession": "GCA_900188145.1", "taxid": 312168, "species_taxid": 312168, "relation_to_type": "type", "validated": true, "ani": 75.356, "matched_fragments": 67, "total_fragments": 2221, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", 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