{ "type": "genome", "identifier": "GCF_000341005.1", "organism": "Nocardiopsis alkaliphila YIM 80379", "title": "Nocardiopsis alkaliphila YIM 80379", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology, Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341005.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472156", "wgs_master": "ANBD00000000.1", "refseq_category": "reference genome", "taxid": "1246461", "species_taxid": "225762", "organism_name": "Nocardiopsis alkaliphila YIM 80379", "infraspecific_name": "strain=YIM 80379", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "SOAPdenovo v1.06", "asm_submitter": "Yunnan Institute of Microbiology, Yunnan University", "gbrs_paired_asm": "GCA_000341005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/005/GCF_000341005.1_SOAPdenovo_v1.06", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5209552", "genome_size_ungapped": "5209552", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "213", "contig_count": "213", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000341005.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "4758", "protein_coding_gene_count": "4548", "non_coding_gene_count": "62", "pubmed_id": "23626695" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis alkaliphila YIM 80379" ], "sample_taxid": [ "1246461" ], 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"status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 81.6944, "matched_fragments": 786, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 81.6151, "matched_fragments": 987, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis xinjiangensis", "strain": "strain=YIM 90004", "accession": "GCA_000341145.1", "taxid": 124285, "species_taxid": 124285, "relation_to_type": "type", "validated": true, "ani": 81.068, "matched_fragments": 849, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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