{ "type": "genome", "identifier": "GCF_000341105.1", "organism": "Nocardiopsis potens DSM 45234", "title": "Nocardiopsis potens DSM 45234", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology, Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341105.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472155", "wgs_master": "ANBB00000000.1", "refseq_category": "reference genome", "taxid": "570268", "species_taxid": "1246458", "organism_name": "Nocardiopsis potens DSM 45234", "infraspecific_name": "strain=DSM 45234", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "SOAPdenovo v1.06", "asm_submitter": "Yunnan Institute of Microbiology, Yunnan University", "gbrs_paired_asm": "GCA_000341105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/105/GCF_000341105.1_SOAPdenovo_v1.06", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6909969", "genome_size_ungapped": "6909969", "gc_percent": "75.000000", "replicon_count": "0", "scaffold_count": "133", "contig_count": "133", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000341105.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "5974", "protein_coding_gene_count": "5846", "non_coding_gene_count": "69", "pubmed_id": "23626695" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis potens DSM 45234" ], "sample_taxid": [ "570268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.812 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6909969", "Number of Sequences": "133", "Longest Sequences (bp)": "251398", "N50 (bp)": "121750", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.8", "Number of CDSs": "5994", "Average Protein Length": "319.3", "Coding Ratio (%)": "83.1", "Number of rRNAs": "4", "Number of tRNAs": "90", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis potens", "strain": "strain=DSM 45234", "accession": "GCA_000341105.1", "taxid": 1246458, "species_taxid": 1246458, "relation_to_type": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 80.2101, "matched_fragments": 1026, "total_fragments": 2243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.9955, "matched_fragments": 848, "total_fragments": 2243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 79.9515, "matched_fragments": 973, "total_fragments": 2243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 79.8339, "matched_fragments": 1035, "total_fragments": 2243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=ATCC 23612", "accession": "GCA_012396365.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 79.7725, "matched_fragments": 1052, "total_fragments": 2243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.7287, "matched_fragments": 848, "total_fragments": 2243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", 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