{ "type": "genome", "identifier": "GCF_000341145.1", "organism": "Nocardiopsis xinjiangensis YIM 90004", "title": "Nocardiopsis xinjiangensis YIM 90004", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology, Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341145.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472150", "wgs_master": "ANBE00000000.1", "refseq_category": "reference genome", "taxid": "1246474", "species_taxid": "124285", "organism_name": "Nocardiopsis xinjiangensis YIM 90004", "infraspecific_name": "strain=YIM 90004", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "SOAPdenovo v1.06", "asm_submitter": "Yunnan Institute of Microbiology, Yunnan University", "gbrs_paired_asm": "GCA_000341145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/145/GCF_000341145.1_SOAPdenovo_v1.06", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5330432", "genome_size_ungapped": "5330432", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000341145.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "4726", "protein_coding_gene_count": "4528", "non_coding_gene_count": "62", "pubmed_id": "23626695" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis xinjiangensis YIM 90004" ], "sample_taxid": [ "1246474" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "1.453 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5330432", "Number of Sequences": "90", "Longest Sequences (bp)": "456282", "N50 (bp)": "147966", "Gap Ratio (%)": "0.003883", "GCcontent (%)": "69.7", "Number of CDSs": "4735", "Average Protein Length": "319.5", "Coding Ratio (%)": "85.2", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis xinjiangensis", "strain": "strain=YIM 90004", "accession": "GCA_000341145.1", "taxid": 124285, "species_taxid": 124285, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1731, "total_fragments": 1737, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 91.0461, "matched_fragments": 1432, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis coralli", "strain": "strain=HNM0947", "accession": "GCA_014892575.1", "taxid": 2772213, "species_taxid": 2772213, "relation_to_type": "type", "validated": true, "ani": 87.3943, "matched_fragments": 1380, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis salina", "strain": "strain=YIM 90010", "accession": "GCA_000341025.1", "taxid": 245836, "species_taxid": 245836, "relation_to_type": "type", "validated": true, "ani": 86.7098, "matched_fragments": 1275, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 81.9544, "matched_fragments": 951, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 81.9198, "matched_fragments": 1086, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis halotolerans", "strain": "strain=DSM 44410", "accession": "GCA_000341065.1", "taxid": 124252, "species_taxid": 124252, "relation_to_type": "type", "validated": 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"total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alba", "strain": "strain=DSM 43377", "accession": "GCA_000341225.1", "taxid": 53437, "species_taxid": 53437, "relation_to_type": "type", "validated": true, "ani": 81.4405, "matched_fragments": 969, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis listeri", "strain": "strain=NBRC 13360", "accession": "GCA_001570765.1", "taxid": 53440, "species_taxid": 53440, "relation_to_type": "type", "validated": true, "ani": 81.4163, "matched_fragments": 1020, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 81.3528, "matched_fragments": 786, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alkaliphila", "strain": "strain=YIM 80379", "accession": "GCA_000341005.1", "taxid": 225762, "species_taxid": 225762, "relation_to_type": "type", "validated": true, "ani": 80.8648, "matched_fragments": 891, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 79.0895, "matched_fragments": 636, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 78.8567, "matched_fragments": 600, "total_fragments": 1737, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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