{ "type": "genome", "identifier": "GCF_000341165.1", "organism": "Nocardiopsis gilva YIM 90087", "title": "Nocardiopsis gilva YIM 90087", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology, Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341165.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472152", "wgs_master": "ANBG00000000.1", "refseq_category": "na", "taxid": "1235441", "species_taxid": "280236", "organism_name": "Nocardiopsis gilva YIM 90087", "infraspecific_name": "strain=YIM 90087", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "SOAPdenovo v1.06", "asm_submitter": "Yunnan Institute of Microbiology, Yunnan University", "gbrs_paired_asm": "GCA_000341165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/165/GCF_000341165.1_SOAPdenovo_v1.06", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6041741", "genome_size_ungapped": "6041741", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "481", "contig_count": "481", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000341165.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "5718", "protein_coding_gene_count": "5345", "non_coding_gene_count": "59", "pubmed_id": "23626695" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis gilva YIM 90087" ], "sample_taxid": [ "1235441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.658 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6041741", "Number of Sequences": "481", "Longest Sequences (bp)": "122588", "N50 (bp)": "24060", "Gap Ratio (%)": "0.015045", "GCcontent (%)": "69.7", "Number of CDSs": "5271", "Average Protein Length": "291.8", "Coding Ratio (%)": "76.4", "Number of rRNAs": "1", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_000341165.1", "taxid": 280236, "species_taxid": 280236, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 80.2545, "matched_fragments": 675, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 80.1465, "matched_fragments": 668, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 80.0744, "matched_fragments": 760, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 80.0633, "matched_fragments": 772, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 79.9266, "matched_fragments": 776, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 79.9127, "matched_fragments": 749, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 79.8175, "matched_fragments": 727, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 79.7331, "matched_fragments": 636, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alba", "strain": "strain=DSM 43377", "accession": "GCA_000341225.1", "taxid": 53437, "species_taxid": 53437, "relation_to_type": "type", "validated": true, "ani": 79.6095, "matched_fragments": 636, "total_fragments": 1800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis xinjiangensis", "strain": "strain=YIM 90004", "accession": 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