{ "type": "genome", "identifier": "GCF_000341205.1", "organism": "Nocardiopsis baichengensis YIM 90130", "title": "Nocardiopsis baichengensis YIM 90130", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology, Yunnan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341205.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472159", "wgs_master": "ANAS00000000.1", "refseq_category": "reference genome", "taxid": "1236902", "species_taxid": "280240", "organism_name": "Nocardiopsis baichengensis YIM 90130", "infraspecific_name": "strain=YIM 90130", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "v1.06", "asm_submitter": "Yunnan Institute of Microbiology, Yunnan University", "gbrs_paired_asm": "GCA_000341205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/205/GCF_000341205.1_v1.06", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6404110", "genome_size_ungapped": "6404110", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000341205.1-RS_2024_10_21", "annotation_date": "2024-10-21", "total_gene_count": "5624", "protein_coding_gene_count": "5507", "non_coding_gene_count": "65", "pubmed_id": "23626695" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis baichengensis YIM 90130" ], "sample_taxid": [ "1236902" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.702 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6404110", "Number of Sequences": "71", "Longest Sequences (bp)": "567616", "N50 (bp)": "216421", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.6", "Number of CDSs": "5695", "Average Protein Length": "318.7", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "16" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis chromatogenes", "strain": "strain=YIM 90109", "accession": "GCA_000341185.1", "taxid": 280239, "species_taxid": 280239, 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80.9776, "matched_fragments": 899, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis mwathae", "strain": "strain=DSM 46659", "accession": "GCA_014201195.1", "taxid": 1472723, "species_taxid": 1472723, "relation_to_type": "type", "validated": true, "ani": 80.97, "matched_fragments": 1038, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_002263495.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 80.9341, "matched_fragments": 992, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 80.6346, "matched_fragments": 990, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 80.483, "matched_fragments": 983, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 80.1211, "matched_fragments": 944, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 79.9827, "matched_fragments": 1010, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 79.9283, "matched_fragments": 813, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.8995, "matched_fragments": 823, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 79.84, "matched_fragments": 993, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis prasina", "strain": "strain=DSM 43845", "accession": "GCA_000341265.1", "taxid": 2015, "species_taxid": 2015, "relation_to_type": "type", "validated": true, "ani": 79.7401, "matched_fragments": 815, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis ganjiahuensis", "strain": "strain=DSM 45031", "accession": "GCA_000341085.1", "taxid": 239984, "species_taxid": 239984, "relation_to_type": "type", "validated": true, "ani": 79.6768, "matched_fragments": 954, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 79.6418, "matched_fragments": 941, "total_fragments": 2105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis coralli", "strain": "strain=HNM0947", "accession": "GCA_014892575.1", "taxid": 2772213, 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