{ "type": "genome", "identifier": "GCF_000341505.1", "organism": "Edwardsiella tarda ATCC 15947 = NBRC 105688", "title": "Edwardsiella tarda ATCC 15947 = NBRC 105688", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341505.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041800", "wgs_master": "BANW00000000.1", "refseq_category": "na", "taxid": "667121", "species_taxid": "636", "organism_name": "Edwardsiella tarda ATCC 15947 = NBRC 105688", "infraspecific_name": "strain=NBRC 105688", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/14", "asm_name": "ASM34150v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000341505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/505/GCF_000341505.1_ASM34150v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3610384", "genome_size_ungapped": "3610384", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "3336", "protein_coding_gene_count": "3211", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-14", "dateModified": "2013-02-14", "datePublished": "2013-02-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Edwardsiella tarda ATCC 15947 = NBRC 105688" ], "sample_taxid": [ "667121" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.028 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3610384", "Number of Sequences": "34", "Longest Sequences (bp)": "269934", "N50 (bp)": "176730", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.3", "Number of CDSs": "3288", "Average Protein Length": "313.4", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Edwardsiella tarda", "strain": "strain=NBRC 105688", "accession": "GCA_000341505.1", "taxid": 636, 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"N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 36.0, "optimum_tmp": 32.5, "optimum_ph": 7.0, "genome_size": 3723534.81, "gc_content": 57.927, "coding_genes": 3296.857, "rRNA16S_genes": 8.333, "tRNA_genes": 97.4, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Edwardsiella", "tarda", "ATCC", "15947", "=", "NBRC", "105688" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }