{ "type": "genome", "identifier": "GCF_000341895.1", "organism": "Pseudodesulfovibrio piezophilus C1TLV30", "title": "Pseudodesulfovibrio piezophilus C1TLV30", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Genoscope CEA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000341895.1", "bioproject": "PRJNA224116", "biosample": "SAMEA2272703", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1322246", "species_taxid": "879567", "organism_name": "Pseudodesulfovibrio piezophilus C1TLV30", "infraspecific_name": "strain=type strain: C1TLV30", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/19", "asm_name": "ASM34189v1", "asm_submitter": "Genoscope CEA", "gbrs_paired_asm": "GCA_000341895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/895/GCF_000341895.1_ASM34189v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3646098", "genome_size_ungapped": "3644098", "gc_percent": "50.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000341895.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3341", "protein_coding_gene_count": "3248", "non_coding_gene_count": "72", "pubmed_id": "23383081" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-19", "dateModified": "2013-02-19", "datePublished": "2013-02-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudodesulfovibrio piezophilus C1TLV30" ], "sample_taxid": [ "1322246" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3646098", "Number of Sequences": "1", "Longest Sequences (bp)": "3646098", "N50 (bp)": "3646098", "Gap Ratio (%)": "0.054853", "GCcontent (%)": "50.0", "Number of CDSs": "3285", "Average Protein Length": "324.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "9", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio piezophilus", "strain": "strain=type strain: C1TLV30", "accession": "GCA_000341895.1", "taxid": 879567, "species_taxid": 879567, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1214, "total_fragments": 1215, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudodesulfovibrio profundus", "strain": "strain=500-1", "accession": "GCA_900217235.1", "taxid": 57320, "species_taxid": 57320, "relation_to_type": "type", "validated": true, "ani": 78.9227, "matched_fragments": 255, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio cashew", "strain": "strain=SRB007", "accession": "GCA_009762795.1", "taxid": 2678688, "species_taxid": 2678688, "relation_to_type": "type", "validated": true, "ani": 78.6955, "matched_fragments": 228, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio sediminis", "strain": "strain=SF6", "accession": "GCA_020886695.1", "taxid": 2810563, "species_taxid": 2810563, "relation_to_type": "type", "validated": true, "ani": 78.4492, "matched_fragments": 188, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio hydrargyri", "strain": "strain=BerOc1", "accession": "GCA_001874525.1", "taxid": 2125990, "species_taxid": 2125990, "relation_to_type": "type", "validated": true, "ani": 77.9378, "matched_fragments": 154, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, "relation_to_type": "type", "validated": true, "ani": 77.904, "matched_fragments": 161, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 77.7782, "matched_fragments": 172, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 77.6908, "matched_fragments": 172, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio alkaliphilus", "strain": "strain=F-1", "accession": "GCA_009729555.1", "taxid": 2661613, "species_taxid": 2661613, "relation_to_type": "type", "validated": true, "ani": 77.5974, "matched_fragments": 136, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maridesulfovibrio salexigens", "strain": "strain=DSM 2638", "accession": "GCA_000023445.1", "taxid": 880, "species_taxid": 880, "relation_to_type": "type", "validated": true, "ani": 77.4866, "matched_fragments": 57, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Pseudodesulfovibrio", "piezophilus", "C1TLV30" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }