{ "type": "genome", "identifier": "GCF_000343165.1", "organism": "Leptospira interrogans serovar Icterohaemorrhagiae str. RGA", "title": "Leptospira interrogans serovar Icterohaemorrhagiae str. RGA", "description": "na", "data type": "Genome sequencing and assembly", "organization": "J. Craig Venter Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000343165.1", "bioproject": "PRJNA224116", "biosample": "SAMN01920605", "wgs_master": "AOVR00000000.1", "refseq_category": "na", "taxid": "1291351", "species_taxid": "173", "organism_name": "Leptospira interrogans serovar Icterohaemorrhagiae str. RGA", "infraspecific_name": "strain=RGA", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/03/01", "asm_name": "CA_glsol113", "asm_submitter": "J. Craig Venter Institute", "gbrs_paired_asm": "GCA_000343165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/343/165/GCF_000343165.1_CA_glsol113", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4600016", "genome_size_ungapped": "4600016", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "143", "contig_count": "143", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-16", "total_gene_count": "3792", "protein_coding_gene_count": "3603", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-03-01", "dateModified": "2013-03-01", "datePublished": "2013-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptospira interrogans serovar Icterohaemorrhagiae str. 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"0.95", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003046425.1", "gtdb_species": "s__Leptospira borgpetersenii", "ani": 79.9559, "matched_fragments": 816, "total_fragments": 1468, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 148, "status": "-" }, { "accession": "GCF_000244815.1", "gtdb_species": "s__Leptospira weilii", "ani": 79.8812, "matched_fragments": 813, "total_fragments": 1468, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 20, "status": "-" } 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