{ "type": "genome", "identifier": "GCF_000344155.1", "organism": "Gordonia paraffinivorans NBRC 108238", "title": "Gordonia paraffinivorans NBRC 108238", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000344155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041809", "wgs_master": "BAOQ00000000.1", "refseq_category": "na", "taxid": "1223543", "species_taxid": "175628", "organism_name": "Gordonia paraffinivorans NBRC 108238", "infraspecific_name": "strain=NBRC 108238", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/02/27", "asm_name": "ASM34415v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000344155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/344/155/GCF_000344155.1_ASM34415v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4632332", "genome_size_ungapped": "4632332", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000344155.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4256", "protein_coding_gene_count": "4086", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-02-27", "dateModified": "2013-02-27", "datePublished": "2013-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia paraffinivorans NBRC 108238" ], "sample_taxid": [ "1223543" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.257 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4632332", "Number of Sequences": "111", "Longest Sequences (bp)": "204551", "N50 (bp)": "107882", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "4183", "Average Protein Length": "324.9", "Coding Ratio (%)": "88.0", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia paraffinivorans", "strain": "strain=NBRC 108238", "accession": "GCA_000344155.1", "taxid": 175628, "species_taxid": 175628, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 82.3989, "matched_fragments": 1049, "total_fragments": 1495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia lacunae", "strain": "strain=BS2", "accession": "GCA_002149015.1", "taxid": 417102, "species_taxid": 417102, "relation_to_type": "type", "validated": true, "ani": 82.3454, "matched_fragments": 1057, "total_fragments": 1495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia crocea", "strain": "strain=NBRC 107697", "accession": "GCA_009932435.1", "taxid": 589162, "species_taxid": 589162, "relation_to_type": "type", "validated": true, "ani": 79.7696, "matched_fragments": 561, "total_fragments": 1495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 79.5598, "matched_fragments": 704, "total_fragments": 1495, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=NBRC 100414", "accession": "GCA_000248055.2", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 79.5587, "matched_fragments": 690, "total_fragments": 1495, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000344155.1", "gtdb_species": "s__Gordonia paraffinivorans", "ani": 100.0, "matched_fragments": 1490, "total_fragments": 1495, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", 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