{
    "type": "genome",
    "identifier": "GCF_000346485.2",
    "organism": "Scytonema hofmannii PCC 7110",
    "title": "Scytonema hofmannii PCC 7110",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Heinrich-Heine-University Duesseldorf",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000346485.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02469880",
        "wgs_master": "ANNX00000000.2",
        "refseq_category": "reference genome",
        "taxid": "128403",
        "species_taxid": "34078",
        "organism_name": "Scytonema hofmannii PCC 7110",
        "infraspecific_name": "strain=PCC 7110",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/03/16",
        "asm_name": "ASM34648v2",
        "asm_submitter": "Heinrich-Heine-University Duesseldorf",
        "gbrs_paired_asm": "GCA_000346485.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/485/GCF_000346485.2_ASM34648v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "12294410",
        "genome_size_ungapped": "12288939",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "86",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-11",
        "total_gene_count": "10964",
        "protein_coding_gene_count": "10538",
        "non_coding_gene_count": "97",
        "pubmed_id": "23221676"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-03-16",
    "dateModified": "2016-03-16",
    "datePublished": "2016-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Scytonema hofmannii PCC 7110"
        ],
        "sample_taxid": [
            "128403"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Bermuda: UK"
        ],
        "sample_host_location_id": [],
        "data_size": "3.460 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "12294410",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "11632038",
        "N50 (bp)": "11632038",
        "Gap Ratio (%)": "0.044500",
        "GCcontent (%)": "41.5",
        "Number of CDSs": "10349",
        "Average Protein Length": "318.6",
        "Coding Ratio (%)": "80.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "29"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Scytonema hofmannii",
                "strain": "strain=PCC 7110",
                "accession": "GCA_000346485.2",
                "taxid": 34078,
                "species_taxid": 34078,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 4078,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brasilonema bromeliae",
                "strain": "strain=SPC951",
                "accession": "GCA_012912135.1",
                "taxid": 383615,
                "species_taxid": 383615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1674,
                "matched_fragments": 743,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brasilonema sennae",
                "strain": "strain=CENA114",
                "accession": "GCA_006968745.1",
                "taxid": 1397703,
                "species_taxid": 1397703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0901,
                "matched_fragments": 897,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Iningainema tapete",
                "strain": "strain=BLCC-T55",
                "accession": "GCA_014698965.1",
                "taxid": 2806730,
                "species_taxid": 2806730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5589,
                "matched_fragments": 831,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc favosum",
                "strain": "strain=CHAB 5714",
                "accession": "GCA_020829495.1",
                "taxid": 2907819,
                "species_taxid": 2907819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2478,
                "matched_fragments": 653,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nostoc punctiforme",
                "strain": "strain=ATCC 29133; PCC 73102",
                "accession": "GCA_000020025.1",
                "taxid": 272131,
                "species_taxid": 272131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2457,
                "matched_fragments": 633,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_000317285.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1095,
                "matched_fragments": 584,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_003990575.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1091,
                "matched_fragments": 598,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aetokthonos hydrillicola",
                "strain": "strain=CCALA 1050",
                "accession": "GCA_017591665.1",
                "taxid": 1550245,
                "species_taxid": 1550245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0536,
                "matched_fragments": 547,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fischerella thermalis",
                "strain": "strain=PCC 7521",
                "accession": "GCA_000317225.1",
                "taxid": 372787,
                "species_taxid": 372787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8896,
                "matched_fragments": 477,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anabaena cylindrica",
                "strain": "strain=NIES-19",
                "accession": "GCA_002367955.1",
                "taxid": 1165,
                "species_taxid": 1165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7813,
                "matched_fragments": 389,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allocoleopsis franciscana",
                "strain": "strain=PCC 7113",
                "accession": "GCA_000317515.1",
                "taxid": 2886352,
                "species_taxid": 2886352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6292,
                "matched_fragments": 179,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gloeocapsopsis crepidinum",
                "strain": "strain=LEGE 06123",
                "accession": "GCA_015207655.1",
                "taxid": 693223,
                "species_taxid": 693223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7705,
                "matched_fragments": 174,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moorena producens",
                "strain": "strain=3L",
                "accession": "GCA_001942475.1",
                "taxid": 1155739,
                "species_taxid": 1155739,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6262,
                "matched_fragments": 134,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Moorena producens",
                "strain": "strain=3L",
                "accession": "GCA_000211815.1",
                "taxid": 1155739,
                "species_taxid": 1155739,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6096,
                "matched_fragments": 132,
                "total_fragments": 4081,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000346485.2",
                "gtdb_species": "s__Tolypothrix_A hofmannii",
                "ani": 100.0,
                "matched_fragments": 4078,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Tolypothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009725235.1",
                "gtdb_species": "s__Tolypothrix_A sp009725235",
                "ani": 88.5046,
                "matched_fragments": 2673,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Tolypothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000760695.4",
                "gtdb_species": "s__Tolypothrix_A bouteillei",
                "ani": 87.2854,
                "matched_fragments": 2265,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Tolypothrix_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002368235.1",
                "gtdb_species": "s__Tolypothrix_B sp002368235",
                "ani": 78.6707,
                "matched_fragments": 1141,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Tolypothrix_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000315565.1",
                "gtdb_species": "s__Mastigocladopsis repens",
                "ani": 78.5088,
                "matched_fragments": 962,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Mastigocladopsis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012912105.1",
                "gtdb_species": "s__Brasilonema sp012912105",
                "ani": 78.2921,
                "matched_fragments": 906,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Brasilonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002163975.1",
                "gtdb_species": "s__HT-58-2 sp002163975",
                "ani": 78.2518,
                "matched_fragments": 913,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__HT-58-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012912135.1",
                "gtdb_species": "s__Brasilonema bromeliae",
                "ani": 78.173,
                "matched_fragments": 742,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Brasilonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006968915.1",
                "gtdb_species": "s__Brasilonema octagenarum",
                "ani": 78.0834,
                "matched_fragments": 899,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Brasilonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_017982655.1",
                "gtdb_species": "s__Brasilonema sp017982655",
                "ani": 78.0229,
                "matched_fragments": 860,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Brasilonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001712795.1",
                "gtdb_species": "s__Nostoc sp001712795",
                "ani": 77.5276,
                "matched_fragments": 670,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903903925.1",
                "gtdb_species": "s__Stigonema sp903903925",
                "ani": 77.5118,
                "matched_fragments": 662,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Stigonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002813575.1",
                "gtdb_species": "s__Nostoc flagelliforme_A",
                "ani": 77.4539,
                "matched_fragments": 665,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002949735.1",
                "gtdb_species": "s__Nostoc sp002949735",
                "ani": 77.4311,
                "matched_fragments": 650,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.73",
                "min_intra_species_ani": "95.05",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017115085.1",
                "gtdb_species": "s__Nostoc sp017115085",
                "ani": 77.2034,
                "matched_fragments": 563,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000317285.1",
                "gtdb_species": "s__Chlorogloeopsis fritschii",
                "ani": 77.0879,
                "matched_fragments": 589,
                "total_fragments": 4081,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Chlorogloeopsis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Scytonema",
        "hofmannii",
        "PCC",
        "7110"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}