{
    "type": "genome",
    "identifier": "GCF_000348685.1",
    "organism": "Xanthomarina gelatinilytica",
    "title": "Xanthomarina gelatinilytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbial Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000348685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN01940371",
        "wgs_master": "ANLA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1137281",
        "species_taxid": "1137281",
        "organism_name": "Xanthomarina gelatinilytica",
        "infraspecific_name": "strain=AK20",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/03/22",
        "asm_name": "Formosa sp. AK20",
        "asm_submitter": "Institute of Microbial Technology",
        "gbrs_paired_asm": "GCA_000348685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/348/685/GCF_000348685.1_Formosa_sp._AK20",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3055484",
        "genome_size_ungapped": "3055484",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000348685.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "2828",
        "protein_coding_gene_count": "2771",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-03-22",
    "dateModified": "2013-03-22",
    "datePublished": "2013-03-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xanthomarina gelatinilytica"
        ],
        "sample_taxid": [
            "1137281"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.854 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3055484",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "901090",
        "N50 (bp)": "164860",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.4",
        "Number of CDSs": "2750",
        "Average Protein Length": "327.4",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Xanthomarina gelatinilytica",
                "strain": "strain=AK20",
                "accession": "GCA_000348685.1",
                "taxid": 1137281,
                "species_taxid": 1137281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 995,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hanstruepera marina",
                "strain": "strain=NBU2968",
                "accession": "GCA_019880635.1",
                "taxid": 2873265,
                "species_taxid": 2873265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0675,
                "matched_fragments": 278,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanihabitans sediminis",
                "strain": "strain=S9-10",
                "accession": "GCA_003337215.1",
                "taxid": 1812012,
                "species_taxid": 1812012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0558,
                "matched_fragments": 214,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanihabitans sediminis",
                "strain": "strain=DSM 28133",
                "accession": "GCA_003315315.1",
                "taxid": 1812012,
                "species_taxid": 1812012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.02,
                "matched_fragments": 214,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera flava",
                "strain": "strain=NBU2984",
                "accession": "GCA_023634025.1",
                "taxid": 2930218,
                "species_taxid": 2930218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8909,
                "matched_fragments": 308,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera ponticola",
                "strain": "strain=MM-14",
                "accession": "GCA_012931685.1",
                "taxid": 2042995,
                "species_taxid": 2042995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.887,
                "matched_fragments": 285,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia algoritergicola",
                "strain": "strain=APA-1",
                "accession": "GCA_008086165.1",
                "taxid": 291187,
                "species_taxid": 291187,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.885,
                "matched_fragments": 348,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia myxarmorum",
                "strain": "strain=ADA-4",
                "accession": "GCA_008086205.1",
                "taxid": 291186,
                "species_taxid": 291186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8246,
                "matched_fragments": 284,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hanstruepera neustonica",
                "strain": "strain=JCM19743",
                "accession": "GCA_002895005.1",
                "taxid": 1445657,
                "species_taxid": 1445657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7417,
                "matched_fragments": 265,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bizionia argentinensis",
                "strain": "strain=JUB59",
                "accession": "GCA_000224335.2",
                "taxid": 456455,
                "species_taxid": 456455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6269,
                "matched_fragments": 244,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana haliotis",
                "strain": "strain=B1N29",
                "accession": "GCA_008806375.1",
                "taxid": 2614804,
                "species_taxid": 2614804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5771,
                "matched_fragments": 159,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aestuariivivens insulae",
                "strain": "strain=AH-MY3",
                "accession": "GCA_022662195.1",
                "taxid": 1621988,
                "species_taxid": 1621988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4598,
                "matched_fragments": 190,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Changchengzhania lutea",
                "strain": "strain=SM1355",
                "accession": "GCA_006974145.1",
                "taxid": 2049305,
                "species_taxid": 2049305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4402,
                "matched_fragments": 181,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana agarivorans",
                "strain": "strain=JW-26",
                "accession": "GCA_001642835.1",
                "taxid": 481183,
                "species_taxid": 481183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4326,
                "matched_fragments": 172,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pectinivorans",
                "strain": "strain=DSM 25730",
                "accession": "GCA_900112595.1",
                "taxid": 870482,
                "species_taxid": 870482,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4254,
                "matched_fragments": 185,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tamlana sedimentorum",
                "strain": "strain=JCM 19808",
                "accession": "GCA_000943565.1",
                "taxid": 1435349,
                "species_taxid": 1435349,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3769,
                "matched_fragments": 202,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Confluentibacter sediminis",
                "strain": "strain=DSL-48",
                "accession": "GCA_003258355.1",
                "taxid": 2219045,
                "species_taxid": 2219045,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3742,
                "matched_fragments": 201,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter onchidii",
                "strain": "strain=XY-114",
                "accession": "GCA_004804355.1",
                "taxid": 2562860,
                "species_taxid": 2562860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3716,
                "matched_fragments": 140,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacinutrix himadriensis",
                "strain": "strain=E4-9a",
                "accession": "GCA_001418105.1",
                "taxid": 641549,
                "species_taxid": 641549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2865,
                "matched_fragments": 285,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychroserpens luteolus",
                "strain": "strain=XSD401",
                "accession": "GCA_021032705.1",
                "taxid": 2855840,
                "species_taxid": 2855840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2832,
                "matched_fragments": 184,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavivirga algicola",
                "strain": "strain=Y03",
                "accession": "GCA_012910715.1",
                "taxid": 2729136,
                "species_taxid": 2729136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2143,
                "matched_fragments": 210,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seonamhaeicola algicola",
                "strain": "strain=Gy8",
                "accession": "GCA_007997385.1",
                "taxid": 1719036,
                "species_taxid": 1719036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1734,
                "matched_fragments": 176,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyunsoonleella ulvae",
                "strain": "strain=HU1-3",
                "accession": "GCA_016827605.1",
                "taxid": 2799948,
                "species_taxid": 2799948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1561,
                "matched_fragments": 148,
                "total_fragments": 996,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000348685.1",
                "gtdb_species": "s__Xanthomarina gelatinilytica",
                "ani": 100.0,
                "matched_fragments": 995,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "98.31",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008084905.1",
                "gtdb_species": "s__Xanthomarina maritima",
                "ani": 80.6525,
                "matched_fragments": 580,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003144015.1",
                "gtdb_species": "s__Xanthomarina sp003144015",
                "ani": 80.6171,
                "matched_fragments": 632,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003148645.1",
                "gtdb_species": "s__Xanthomarina spongicola",
                "ani": 80.4957,
                "matched_fragments": 623,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014638915.1",
                "gtdb_species": "s__Xanthomarina arctica",
                "ani": 79.9284,
                "matched_fragments": 599,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002366675.1",
                "gtdb_species": "s__Xanthomarina sp002366675",
                "ani": 79.5606,
                "matched_fragments": 404,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014641635.1",
                "gtdb_species": "s__Aquaticitalea lipolytica",
                "ani": 77.9635,
                "matched_fragments": 248,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquaticitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860825.1",
                "gtdb_species": "s__Oceanihabitans sp018860825",
                "ani": 77.9289,
                "matched_fragments": 291,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Oceanihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004366715.1",
                "gtdb_species": "s__Meridianimaribacter flavus",
                "ani": 77.9255,
                "matched_fragments": 248,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900114265.1",
                "gtdb_species": "s__Flaviramulus basaltis",
                "ani": 77.7604,
                "matched_fragments": 242,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flaviramulus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000224335.1",
                "gtdb_species": "s__Algorimicrobium argentinense",
                "ani": 77.6321,
                "matched_fragments": 245,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algorimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000943565.1",
                "gtdb_species": "s__Tamlana_B sedimentorum",
                "ani": 77.3664,
                "matched_fragments": 205,
                "total_fragments": 996,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3055484.0,
        "gc_content": 35.4,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Xanthomarina",
        "gelatinilytica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}