{ "type": "genome", "identifier": "GCF_000348945.1", "organism": "Paeniglutamicibacter gangotriensis Lz1y", "title": "Paeniglutamicibacter gangotriensis Lz1y", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Cellular and Molecular Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000348945.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469439", "wgs_master": "AOCK00000000.1", "refseq_category": "reference genome", "taxid": "1276920", "species_taxid": "254787", "organism_name": "Paeniglutamicibacter gangotriensis Lz1y", "infraspecific_name": "strain=Lz1y", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/03/25", "asm_name": "ArGa1", "asm_submitter": "Centre for Cellular and Molecular Biology", "gbrs_paired_asm": "GCA_000348945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/348/945/GCF_000348945.1_ArGa1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4319900", "genome_size_ungapped": "4319900", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000348945.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4038", "protein_coding_gene_count": "3909", "non_coding_gene_count": "65", "pubmed_id": "23766407" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-03-25", "dateModified": "2013-03-25", "datePublished": "2013-03-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Paeniglutamicibacter gangotriensis Lz1y" ], "sample_taxid": [ "1276920" ], "sample_host_organism": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.7506, "matched_fragments": 269, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.6836, "matched_fragments": 246, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.664, "matched_fragments": 245, "total_fragments": 1429, "ani_threshold": 95, "status": 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001863355.1", "gtdb_species": "s__Paeniglutamicibacter sp001863355", "ani": 84.4331, "matched_fragments": 1013, "total_fragments": 1429, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876575.1", "gtdb_species": "s__Paeniglutamicibacter psychrophenolicus", "ani": 84.3558, "matched_fragments": 952, "total_fragments": 1429, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019084045.1", "gtdb_species": "s__Paeniglutamicibacter sp019084045", "ani": 83.4055, "matched_fragments": 885, "total_fragments": 1429, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876535.1", "gtdb_species": "s__Paeniglutamicibacter kerguelensis", "ani": 81.4127, "matched_fragments": 715, "total_fragments": 1429, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.243, "cell_length": 0.127, "doubling_h": null, "growth_tmp": 22.0, "optimum_tmp": 22.0, "optimum_ph": 7.0, "genome_size": 4319900.0, "gc_content": 63.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paeniglutamicibacter", "gangotriensis", "Lz1y" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }