{
    "type": "genome",
    "identifier": "GCF_000350165.1",
    "organism": "Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643",
    "title": "Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "TUT",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000350165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2272400",
        "wgs_master": "CAUI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1293054",
        "species_taxid": "43595",
        "organism_name": "Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643",
        "infraspecific_name": "strain=type strain:DSM 6643",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/03/13",
        "asm_name": "ASM35016v1",
        "asm_submitter": "TUT",
        "gbrs_paired_asm": "GCA_000350165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/350/165/GCF_000350165.1_ASM35016v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2873865",
        "genome_size_ungapped": "2873865",
        "gc_percent": "32.500000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000350165.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2738",
        "protein_coding_gene_count": "2627",
        "non_coding_gene_count": "80",
        "pubmed_id": "23640197"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-03-13",
    "dateModified": "2013-03-13",
    "datePublished": "2013-03-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643"
        ],
        "sample_taxid": [
            "1293054"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.789 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2873865",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "900505",
        "N50 (bp)": "723182",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.3",
        "Number of CDSs": "2644",
        "Average Protein Length": "325.8",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halanaerobium saccharolyticum subsp. saccharolyticum",
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                "accession": "GCA_000350165.1",
                "taxid": 267736,
                "species_taxid": 43595,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 946,
                "total_fragments": 947,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halanaerobium congolense",
                "strain": "strain=DSMZ 11287",
                "accession": "GCA_004366375.1",
                "taxid": 54121,
                "species_taxid": 54121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7885,
                "matched_fragments": 602,
                "total_fragments": 947,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobium praevalens",
                "strain": "strain=DSM 2228",
                "accession": "GCA_000165465.1",
                "taxid": 2331,
                "species_taxid": 2331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.717,
                "matched_fragments": 428,
                "total_fragments": 947,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobium kushneri",
                "strain": "strain=ATCC 700103",
                "accession": "GCA_900156285.1",
                "taxid": 56779,
                "species_taxid": 56779,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6739,
                "matched_fragments": 498,
                "total_fragments": 947,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobium salsuginis",
                "strain": "strain=ATCC 51327",
                "accession": "GCA_900114545.1",
                "taxid": 29563,
                "species_taxid": 29563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8796,
                "matched_fragments": 285,
                "total_fragments": 947,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Orenia marismortui",
                "strain": "strain=DSM 5156",
                "accession": "GCA_000379025.1",
                "taxid": 46469,
                "species_taxid": 46469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.681,
                "matched_fragments": 65,
                "total_fragments": 947,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000350165.1",
                "gtdb_species": "s__Halanaerobium saccharolyticum",
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                "matched_fragments": 946,
                "total_fragments": 947,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004366375.1",
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                "ani": 82.7975,
                "matched_fragments": 601,
                "total_fragments": 947,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_003053565.1",
                "gtdb_species": "s__Halanaerobium saccharolyticum_B",
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                "matched_fragments": 502,
                "total_fragments": 947,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.03",
                "min_intra_species_ani": "96.03",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003259895.1",
                "gtdb_species": "s__Halanaerobium saccharolyticum_A",
                "ani": 81.3706,
                "matched_fragments": 544,
                "total_fragments": 947,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004362045.1",
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                "ani": 81.1272,
                "matched_fragments": 545,
                "total_fragments": 947,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003070825.1",
                "gtdb_species": "s__Halanaerobium sp003070825",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000165465.1",
                "gtdb_species": "s__Halanaerobium praevalens",
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                "matched_fragments": 426,
                "total_fragments": 947,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halanaerobiales;f__Halanaerobiaceae;g__Halanaerobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156285.1",
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                "matched_fragments": 500,
                "total_fragments": 947,
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                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "97.73",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.265,
        "cell_length": 0.457,
        "doubling_h": 0.591,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.5,
        "optimum_ph": 9.2,
        "genome_size": 3214959.0,
        "gc_content": 31.737,
        "coding_genes": 2191.333,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 56.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halanaerobium",
        "saccharolyticum",
        "subsp.",
        "saccharolyticum",
        "DSM",
        "6643"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}