{
    "type": "genome",
    "identifier": "GCF_000353285.1",
    "organism": "Leptolyngbya boryana PCC 6306",
    "title": "Leptolyngbya boryana PCC 6306",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000353285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261250",
        "wgs_master": "ALVM00000000.1",
        "refseq_category": "na",
        "taxid": "272134",
        "species_taxid": "1184",
        "organism_name": "Leptolyngbya boryana PCC 6306",
        "infraspecific_name": "strain=PCC 6306",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/04/06",
        "asm_name": "ASM35328v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000353285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/353/285/GCF_000353285.1_ASM35328v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7262454",
        "genome_size_ungapped": "7261054",
        "gc_percent": "47.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000353285.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "6905",
        "protein_coding_gene_count": "6766",
        "non_coding_gene_count": "80",
        "pubmed_id": "23277585"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-04-06",
    "dateModified": "2013-04-06",
    "datePublished": "2013-04-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptolyngbya boryana PCC 6306"
        ],
        "sample_taxid": [
            "272134"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "2.061 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7262454",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "6255543",
        "N50 (bp)": "6255543",
        "Gap Ratio (%)": "0.019277",
        "GCcontent (%)": "47.0",
        "Number of CDSs": "6638",
        "Average Protein Length": "313.7",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leptolyngbya boryana",
                "strain": "strain=PCC 6306",
                "accession": "GCA_000353285.1",
                "taxid": 1184,
                "species_taxid": 1184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2419,
                "total_fragments": 2419,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nostoc punctiforme",
                "strain": "strain=ATCC 29133; PCC 73102",
                "accession": "GCA_000020025.1",
                "taxid": 272131,
                "species_taxid": 272131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9275,
                "matched_fragments": 65,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kovacikia minuta",
                "strain": "strain=CCNU0001",
                "accession": "GCA_020091585.1",
                "taxid": 2931930,
                "species_taxid": 2931930,
                "relation_to_type": "type",
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                "ani": 76.8732,
                "matched_fragments": 111,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptothermofonsia sichuanensis",
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                "accession": "GCA_019891175.1",
                "taxid": 2917832,
                "species_taxid": 2917832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4207,
                "matched_fragments": 68,
                "total_fragments": 2419,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allocoleopsis franciscana",
                "strain": "strain=PCC 7113",
                "accession": "GCA_000317515.1",
                "taxid": 2886352,
                "species_taxid": 2886352,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2587,
                "matched_fragments": 72,
                "total_fragments": 2419,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptodesmis sichuanensis",
                "strain": "strain=PKUAC-SCTA121",
                "accession": "GCA_021379005.1",
                "taxid": 2906798,
                "species_taxid": 2906798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8903,
                "matched_fragments": 88,
                "total_fragments": 2419,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000353285.1",
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                "total_fragments": 2419,
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                "accession": "GCA_014695255.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Leptolyngbya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001485215.1",
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                "total_fragments": 2419,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Leptolyngbya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001548435.1",
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                "matched_fragments": 744,
                "total_fragments": 2419,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Leptolyngbya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_014695195.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__Leptolyngbya",
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                "num_clustered_genomes": 2,
                "status": "-"
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_014698505.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Leptolyngbyales;f__Leptolyngbyaceae;g__JSC-12",
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            },
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
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        "coding_genes": 6282.25,
        "rRNA16S_genes": 3.333,
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "boryana",
        "PCC",
        "6306"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}